Agra012534.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057937.1:46502113-46503815[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-09 9.2e-08 33.9 0.0 2 45 10 53 9 53 0.95
Sequence Information
- Coding Sequence
- ATGTCTCCTAAAAGGCCACCTTGGTGCGAGGAggatttaatatcagcagttcGATCTGTTCAACGCGATACTCTGAGTACATATAGGGCTGCGGCAAGGTTTAATATTCCCAGAAGAACCATTAGAAATCATGTTCAGAATGGAATCCAAATAAAAAGACTAGGtcgtaaatctattttaaaagaagaacaagaagctgatctcgttaaaagaataataagatttagtgAAATAGGTCTACCTGTGACTCCACGGATCCTTCGTCGATTGGTATTCAGATTCtgcgaagataataaaattgctcaTCAATCTAATACAACTTCAAAACTTGCTGGTAAAGACTGGCTTAAGGCTTTTATGAAGAGAAATTctgtaatttctaaaagaaaatcaCAGTTTATGAATACAGCTAGGGCTcagaaacttaataaatttatagttgatgatcatttttcaaaaatagggaaaatgtatgatgatcttgatataattaatcaccctgaaagactttataatatggatgaaaaaggaTGCCGCTTGACTATTCACCACCAGCCAACCGTTTTAGCTAAGAAAGGGGTAAAACGTGTTCACTTTCAATCGGAAAAGTTAAGCACCGAATGGTATTGCCATGGGTGTGAGGAAGACAGGCAGGCCGATATGAGGCAGTGCAGCAAATGTCTTAATTGGTACCATGAGGAATGTGTTGGCTTAACAGTCAATGACATGGATGATTTTGAGTGTCCCGATGGCTGCTAA
- Protein Sequence
- MSPKRPPWCEEDLISAVRSVQRDTLSTYRAAARFNIPRRTIRNHVQNGIQIKRLGRKSILKEEQEADLVKRIIRFSEIGLPVTPRILRRLVFRFCEDNKIAHQSNTTSKLAGKDWLKAFMKRNSVISKRKSQFMNTARAQKLNKFIVDDHFSKIGKMYDDLDIINHPERLYNMDEKGCRLTIHHQPTVLAKKGVKRVHFQSEKLSTEWYCHGCEEDRQADMRQCSKCLNWYHEECVGLTVNDMDDFECPDGC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00116019;
- 90% Identity
- iTF_00116019;
- 80% Identity
- -