Agra000666.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057936.1:3904959-3907649[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-11 3.9e-09 38.3 0.0 2 39 22 60 21 64 0.89
Sequence Information
- Coding Sequence
- atggcTACCAAGAAAGGCGTAAAGTTAAACGTTTCAAAACCCCGTAAGATGTTCACCTACAATGAAGAAAATCTCAATGTAGCCCTTAAACATGTGAGGGAAGGAACCTTGAGCGTTAGAGCAGCTTCAAAAGAATTTGGCGTTCCCAGGAGCACTATCCAAGATAGAGTGGCTGGAAGAAAACCAgatgaattgaaaaaaactgggcCAGAACCAATTATGACAATTGAAGGTGAGAAACGCATAAAAGAGTGGGCTATAGCGCTTGCTAAGTCCggatttccaataaaaaaacatgagtTGATGGAGACCGTTACTAAAGTTGCCATTAGTAATGGAAAAAtcgattcttttaaaaataatagggtTGGAGAGAAATGGTACTTGCGATTTCTCTCGAGACATCCAGAACTAAAATTGCGTGAGTCTGAAAGCATTAATAAAGCACGGGCAGTAGTCACCGAAGAGTATATTAGGTCATGGTTTAGGGAATTGAGTAATTTTTTGGAAGAGAATAATCTTCAAGAGGTTATGGAGGATCCTACCCGTATTTTCAACGGAGATGAATCAGGATTTTCATTAGATCCTAAAACAGGAAAAGTTCTTGCTCCTCGGGGTCTTAAGAACGTATATTCAGTTAAAAAAGGCAATGAAAAGGAAACACTGACAgttcttattacatttaatgCACATGGAGATATTTGCCCCCCACTAGTTGTATTTCCGTATGTAAGGCCCCCGAAATCAGTTATTATGAATATGCCTGATAATTGGGTTCTTGGTAAATCCGACAGTGGGTGGATGAAGAGCGACGTATTCTATGAATATGTTTGCAATGATTTCAATAAATGGCTTGAGAATGGCAATATTAAAAAGCCAATCATATTATTTATAGACGGACATCGctcacatttaaatatatttttaagcgaATTCTGtgaaaaaaatggaattattcTTTACTCACTACCACCCAACACTACCCATGTACTCCAGCCCGCAGATGTAAGCGTGTTTAGGCCATTGAAACACCAATGGAAAAAAACCGTCAGGGAATGGCAAAGTACACAGGATGATGTAACCAGTTCAATTACAAAagtgaatttttgtaaaatatttcagcAAAGTTTAGATAAGGTAGATATGGTGCCTTGCATTAAAAATGGATTTCGTAAATGTGGACTCTTTCCATTAAATCCGGACAATGTGGATTACACAAAGTGTGTCCAaaatgttttagaaaaaaacaaacgCCCAGTCCAAAAAGAATATGACATTAAACAAGAAGAAATTGATAATGCCAAAAAAGTGATAAATCTTATCGAAACAAACTTAGCTGCCAAAGGTGTTGACGCAAAAATCATTTACCAAACCATAGATGAAATAAAGGTAAAGACTGAGCATGAAAcgataaatattataagtgaCATAACTGTTAATGACATGGAAATAACAATACATAAAGATAATTCATTGTCAGAGTCACTACCTATTGGTAGTATTGTCCCAATGGATTCTTTGAGTATAATTCCCTTTGaggatttaaatttaacattgaCAGATTTGCCGTTGGATATATCTGTCACTGACATATTTGGAGCCAAAGAACCAGAGCATAGACACAACTATAAtgattctataaatatttatcaagacAATTACAAACAGAAAGGACCAAATGACAATGATAACAAAGATGaagcaattgaaaaaaaacccgaacatgataataaaaaagatacaCAAGGAAATTATACATCTGCTATCACCAAAGAAACTCATGAATTTACCAGTCCAATTGAAGAAttcggtaaaaaaattaaaaatgatgacaaaaaATGTGAAGAAGATGATCAGAATCCACCAGAAAATGAAACCCTTGCTACCATTGAAGAAAGTCACGACTCTACTAATCCAATTGAAGAGACTAAAAGTTTAGATGACAATAAAAGTGAaccagaaaaccaaagaaatctTGCAGACAATGATGCCTTAACTATCATTGAAGAAGGCCATACCATCAATCAAACTGAAGAGTTCAAGcaaccattattatttaaagaatctaaaaataatattcctgaAGAACTTGGATatgacataaatagtagtaaagaaaatattaacaacCAAACAGCATGTGAAGTTAAAGGAGCAGATGCAATAACAAGAGAAGAAAGACCATTAAAAAGTATCGAAAATGAACTAGATAAAATCCAGATTGGCGAAAAAACCCCCCAAAAATCTATGAACGACGTTGAAGTTTTAAGTCCATTTTCTCAACATCTGAAGTTTCCCgaacctattaaaaaaaataacgaaagtaaaaaacgagataaactGCCAAGTGCAATTTCCTCCAAAGCTTGGAGGGAACATATtcaaaaacaagaaaaagaaaaacagaataaaCTGGATGtccagaagaagaaaaaagaagaaagacaGGAGAAAAAGACACTGATAGCTAAAAATATGAGTGTCtcgaaaaataacaaaaaaagtaaaaaaattaaacttatgtGTTCTCTTTGCGAGGACGAACTTATAAGTGATACAGAAGATgacaatttgaaaaatgtagGCTGTGATATCTGTCCTAAGTGGTACCATTTAGCGTGCACTGAATTGTCCCATTTATCATATTCAGAAGCTGCAAGCAAAGattttatatgtatttcttGCCAGTAA
- Protein Sequence
- MATKKGVKLNVSKPRKMFTYNEENLNVALKHVREGTLSVRAASKEFGVPRSTIQDRVAGRKPDELKKTGPEPIMTIEGEKRIKEWAIALAKSGFPIKKHELMETVTKVAISNGKIDSFKNNRVGEKWYLRFLSRHPELKLRESESINKARAVVTEEYIRSWFRELSNFLEENNLQEVMEDPTRIFNGDESGFSLDPKTGKVLAPRGLKNVYSVKKGNEKETLTVLITFNAHGDICPPLVVFPYVRPPKSVIMNMPDNWVLGKSDSGWMKSDVFYEYVCNDFNKWLENGNIKKPIILFIDGHRSHLNIFLSEFCEKNGIILYSLPPNTTHVLQPADVSVFRPLKHQWKKTVREWQSTQDDVTSSITKVNFCKIFQQSLDKVDMVPCIKNGFRKCGLFPLNPDNVDYTKCVQNVLEKNKRPVQKEYDIKQEEIDNAKKVINLIETNLAAKGVDAKIIYQTIDEIKVKTEHETINIISDITVNDMEITIHKDNSLSESLPIGSIVPMDSLSIIPFEDLNLTLTDLPLDISVTDIFGAKEPEHRHNYNDSINIYQDNYKQKGPNDNDNKDEAIEKKPEHDNKKDTQGNYTSAITKETHEFTSPIEEFGKKIKNDDKKCEEDDQNPPENETLATIEESHDSTNPIEETKSLDDNKSEPENQRNLADNDALTIIEEGHTINQTEEFKQPLLFKESKNNIPEELGYDINSSKENINNQTACEVKGADAITREERPLKSIENELDKIQIGEKTPQKSMNDVEVLSPFSQHLKFPEPIKKNNESKKRDKLPSAISSKAWREHIQKQEKEKQNKLDVQKKKKEERQEKKTLIAKNMSVSKNNKKSKKIKLMCSLCEDELISDTEDDNLKNVGCDICPKWYHLACTELSHLSYSEAASKDFICISCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00115714; iTF_00115719; iTF_00115720; iTF_00115721; iTF_00115722; iTF_00115723; iTF_00115724; iTF_00115728;
- 90% Identity
- iTF_00115714; iTF_00115719; iTF_00115720; iTF_00115721; iTF_00115722; iTF_00115723; iTF_00115724; iTF_00115728;
- 80% Identity
- iTF_00115723;