Basic Information

Insect: Anthonomus grandis
Gene Symbol: clz9
Assembly: GCA_030068095.1
Location: CM057953.1:14855979-14857826[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.6e-13 4.2e-11 44.6 0.2 7 44 24 61 19 62 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.6e-13	4.2e-11	44.6	0.2	7	44	24	61	19	62	0.94

Sequence Information

Coding Sequence: ATGCcgagaatttacaaaaaaaaattggggccgCAGGGAAAATATAACTACGATCAAGAATATGTTCGTCGAGCAGTGGCAGCGGTTAGACGAGGTGATATGTCCATGAGACAAGCATCTGAAAGATTTGGTGTACCTTTCAGTACCATTCAAAGAAGATATCATGgcaaacattctttaaaatatggtCGACAGCCTGTACTAAGTGGTGAGCAAGAGCTAAGACTAAAGGAGACAATCAAAATTTGCGCCGACTGGGGATTCCCATTAAAAAGTACAGATGTTAGAGCAATTGTGCAACAATATCTAAATAGACTAGGAGTAAGGGATtccagatttaaagaaaatatgccaGGGATGGACTGGTTCAAAAGTTTTATGAGCAGAAATAAAGACCTTACCGTTAAGTTGGCTGAAAATACAAAACGCGTTAGAGGTGCATTAACCCGCGaggttattcaaaaatattttgaaaacttgcaGGTCACGTTGAAAGACGTCCCTGctcaaaatattatcaattacgACGAGACCAATTTTGTGGATGATCCCGGGTCGGCTAAAGTAATTACAAAAAGAGGTGCAAAGCATGCCCATAGGTTAATAGACTCCTCAAAGACCAGCACAACTGTGATGTTTGCAATAGCCGCTGATGGAACATTACTGCCTCCATATACGGTATACAAGGCAAAACATTCCTATGATGGTTGGACAGAGGGAGGAATTGAAGGAGCAAGATATAACAGAAGCATGAGTGGATGGTTTGACTCTGATATATTTGAGGACTGGTTTAAGACAATTGTCATGCCTTATTTTCGAAAGCTTGCTGAGCGTAAAGTTTTAATAGGCGATAACTTAAATCGCCACATTACCACTAATGTCGTACAGCAATGTGAGaataatgaaattgattttgtcTTACTCCCTCCCAATTCAACTCATTTGCTTCAACCGCTCGATGTCGCGTATTTTAGGCCTTTAAAAGCTGCATGGAGATCCACCTTGGAACAATGGAAACTAAAACACCGTGGAGTCATTCCTAAAACGGAGTTTCCAAGGCTGCTGAGACAGAGTGTGGAAAAGGTTGGCATAAAGTCGAAAGAAAATTCCATTGCTGGTTTTAAGGCATGTGGAATTTTTCCGCTCGATCccaacaaagttttaaataaaattccacgAAATTTACACATCGATGAAAATGGTGAGAATAATGATCAGGCCTGGAGTAACACAATAATCAgtcacctaaaaaatttaaaaactaccccGAATCAATCAACaaagagaggaaaaaaaattattatcgagGCTGGCAAAAGTGTGTCAAGTCAAAGTTTATTATCAACGATAATAGATAAAACACCCACAAAACAatcatctaaaaaaaacatgaaaaaaaacgaaagaagAGCCCTGGAAATATCGGATGATGAGTTAGATCGAGAGTTAGATAAAGAATTTTCCCTAAgtgatttcgaaaatattgttgaaaactTTGACGAGTTTGATCCAAATCCGTCGACATCGAATGATGATACTTACATGATCGACACAGACTTATCCATGGAGCCAAGGATTGGGgagtttattattgcaaagtttccaACCGAGAAACGAGATCGATTGTTTGTTGGCAAAATCGAGAAttgttcaaagaaaaaagaatttactaTAAATGCCATGAGAAAAAAGGGAAACTCGGAAAAGGGGTATTTTGTTTATCCAGAAATACAGGACCTTTGCCTAATAAGCCAAGaccaaattattagaaaactgcGTCAAAAGTCTTTCAAGAGgggtaaatttgtttttaacttaGACAACGAcgaatttaaaaagttggagtaa
Protein Sequence: MPRIYKKKLGPQGKYNYDQEYVRRAVAAVRRGDMSMRQASERFGVPFSTIQRRYHGKHSLKYGRQPVLSGEQELRLKETIKICADWGFPLKSTDVRAIVQQYLNRLGVRDSRFKENMPGMDWFKSFMSRNKDLTVKLAENTKRVRGALTREVIQKYFENLQVTLKDVPAQNIINYDETNFVDDPGSAKVITKRGAKHAHRLIDSSKTSTTVMFAIAADGTLLPPYTVYKAKHSYDGWTEGGIEGARYNRSMSGWFDSDIFEDWFKTIVMPYFRKLAERKVLIGDNLNRHITTNVVQQCENNEIDFVLLPPNSTHLLQPLDVAYFRPLKAAWRSTLEQWKLKHRGVIPKTEFPRLLRQSVEKVGIKSKENSIAGFKACGIFPLDPNKVLNKIPRNLHIDENGENNDQAWSNTIISHLKNLKTTPNQSTKRGKKIIIEAGKSVSSQSLLSTIIDKTPTKQSSKKNMKKNERRALEISDDELDRELDKEFSLSDFENIVENFDEFDPNPSTSNDDTYMIDTDLSMEPRIGEFIIAKFPTEKRDRLFVGKIENCSKKKEFTINAMRKKGNSEKGYFVYPEIQDLCLISQDQIIRKLRQKSFKRGKFVFNLDNDEFKKLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00115650; iTF_00115651; iTF_00115652; iTF_00115653; iTF_00115654; iTF_00116237; iTF_00115664; iTF_00116245; iTF_00115641; iTF_00115648; iTF_00115662; iTF_00115669;
90% Identity: iTF_00115650; iTF_00115651; iTF_00115652; iTF_00115653; iTF_00115654; iTF_00116237; iTF_00115664; iTF_00115641; iTF_00115648; iTF_00115662; iTF_00115669; iTF_00116245;
80% Identity: -