Agra032344.1
Basic Information
- Insect
- Anthonomus grandis
- Gene Symbol
- -
- Assembly
- GCA_030068095.1
- Location
- CM057942.1:9403793-9411108[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-09 5.4e-07 31.4 0.0 1 38 183 221 183 226 0.90 2 4 1.2e-11 8.8e-10 40.4 0.1 1 39 237 275 237 278 0.95 3 4 4.1e-17 3e-15 57.8 0.0 1 45 292 337 292 337 0.98 4 4 5.6e-15 4.2e-13 51.0 0.0 1 39 344 383 344 387 0.94
Sequence Information
- Coding Sequence
- ATGACCAGAATTCACTACAAAAAGTTCTACAGTGGAGAAAAATCTGAAAAAGATCTATCGCTTATAATGAGTAGCCATGCGATAATGGCAGGACAGgCGATGTTTTCTCCGTTTGATACCGATGATTTCACCCCCGAACCCCCGGCGCCATCTGCCATTCCCGTGGGACACGTGGACATGTCTGACCAATCAGCAACGATGCTAACCAACGTACCCATTCATAGGACTGACCTGTCCGATGCTAGAATTCCTCCGACGAAGTATAGTGCGATCGAAGTTAAAAAGGAGCCAGAGATTGAAATAAAATACGAAGATTTACGTTCCTTCGACCAAGACAGCCTCTTAGAAATCGACTCGCATATGAGCGAAGACGCGGACCTGCGACACTCGAGACTTATGAGTTCCGAATATAATCCCCCTgtacatattataaatagtttaGAAACAAACGACAGTAGCGAAAATAGCGATTTAAACAGTACAAAAACAAACGGACACGGTGATTCCAGTGGAAGAAGTCAAAGTGGAAGCGGACCAAAAACGTGGACGCAGGAAGATATGGATATGGCACTTGAcgctttaaaaaatcataatatgaGTCTGACGAaggCTTCTGCAACTTATGGTATCCCTTCGACGACTTTATGGCAAAGGGCGCACCGTATGGGTATCGATACGCCCAAAAAGGAAGGCCCTACGAAGTCATGGACTGAGGAAAACCTTAATAATGCCCTGGAAGCTTTAAGGACGGGTACAATATCTGCCAATAAAGCTAGTAAGGCTTATGGAATTCCAAGTAGTACATTGTACAAAATAGCGAGAAGAGAAGGAATAAGACTGGCAGCACCATTTAACGCGGCACCAACGACCTGGACCCCCGAGGATTTGGAAAAAGCATTAGAATCAATTAGAACAGGTCAGACCTCCGTCCAAAAAGCTTCCACAGAGTTCGGAATACCCACTGGCACTCTTTATGGCAGGTGTAAGAGAGAAGGTATTGAATTGTCTAGATCAAATCCAACCCCTTGGTCTGAAGATGCTATGGGGGAGGCCTTAGAAGCAGTAaggTTAGGTCATATGTCCATAAATCAAGCAGCCATCCACTATAACTTGCCTTATTCTTCCTTATATGGTAGATTTAAAAGAGGAATCAAATACGACTCTGACAATATTGAGATCCAACAAGAAAATACGCAAATTCCAATTGAACCTCAACATCAAATGGAATTGCACACATTCAGCGATCTTCAGTTCAGTAACGGGCAACCGGTCCACTATCCAAACCTTCAACCAAATAGCTGA
- Protein Sequence
- MTRIHYKKFYSGEKSEKDLSLIMSSHAIMAGQAMFSPFDTDDFTPEPPAPSAIPVGHVDMSDQSATMLTNVPIHRTDLSDARIPPTKYSAIEVKKEPEIEIKYEDLRSFDQDSLLEIDSHMSEDADLRHSRLMSSEYNPPVHIINSLETNDSSENSDLNSTKTNGHGDSSGRSQSGSGPKTWTQEDMDMALDALKNHNMSLTKASATYGIPSTTLWQRAHRMGIDTPKKEGPTKSWTEENLNNALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRTGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYDSDNIEIQQENTQIPIEPQHQMELHTFSDLQFSNGQPVHYPNLQPNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -