Acar011719.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- nfxl1
- Assembly
- GCA_905404175.1
- Location
- FR989973.1:559677-562181[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1 2.3e+04 -7.8 5.6 15 19 134 138 133 138 0.81 2 17 0.0052 1.2e+02 3.2 0.3 4 10 169 175 168 176 0.97 3 17 1.6e-07 0.0036 17.6 15.9 3 19 186 202 185 202 0.95 4 17 6.9e-08 0.0016 18.8 16.4 3 18 239 254 226 255 0.91 5 17 2.4e-08 0.00055 20.3 10.9 1 19 290 308 290 308 0.99 6 17 2.1e-07 0.0048 17.2 17.3 3 19 345 361 337 361 0.87 7 17 0.62 1.4e+04 -3.4 0.4 7 11 365 369 365 369 0.84 8 17 2.4e-07 0.0055 17.1 16.3 1 18 395 412 395 413 0.97 9 17 1.2e-08 0.00027 21.2 16.9 1 19 422 440 422 440 0.99 10 17 0.0022 52 4.4 7.2 9 19 488 498 486 498 0.89 11 17 0.013 3.1e+02 1.9 8.6 3 12 509 518 508 518 0.90 12 17 0.16 3.6e+03 -1.5 3.5 14 18 547 551 547 552 0.87 13 17 0.17 4e+03 -1.7 0.2 8 12 568 572 567 572 0.80 14 17 0.00038 8.7 6.8 5.2 1 11 588 598 582 599 0.91 15 17 0.28 6.4e+03 -2.3 1.1 15 18 613 616 612 617 0.82 16 17 0.00023 5.3 7.5 17.1 1 18 628 645 628 646 0.85 17 17 7.6e-08 0.0018 18.6 11.7 1 16 687 701 687 707 0.91
Sequence Information
- Coding Sequence
- ATGGCACGTAGATATCGTGATGCAGCTGCGAAATTGCAGCAGAATGTGCATAAGCATTTGAAAACCATGAAGGATATTTCTTCTTCTGAAGATGAAGAACCTTATGAGACTGGAGTTCTAGAAGGAGTTTTCCAAAGCTATTGGCGTGGTGGTGGTGATACACACGTGATAAATAGGACAAAGAATCTTCTAGAAGAAGCCTTAAGCGGACGATCCATCACTTGTCTAATCTGCATAGGGTCCATAAAAAGAGCTGACGCAATTTGGACTTGCAACCACTGCCATTCCTACTTCCATCTATCTTGTATCCAGAAATGGTCTAATGATAGTATAAGCTTGCGTTCCGAGGAAACTCAAGGTCCGATCTCTGTTGTAAAACCTATAAAAATAGAGTGGTGTTGTCCTAAATGTAGAACTGCATACAGTAAGGAGGAGATACCACGTAAGTATCGTTGTTTTTGTGAAAAGACTGATGATCCGCCATATCATCCTTGGTTAGTTCCACATACATGTGGGGAAGTGTGTGGAAAAAGGCTTTCCTTAGGAGATAATTGTAAACATAAATGTTTATTGCTGTGTCACCCTGGCCCGTGCCCTCCCTGTCCTCAAACAGTGAATGGTATTTGTTATTGTGGAAAGGAGAAGCAGAGAGTGAGATGTAGTGCAGCAAAATGGTCTTGTGGACAGCCATGTAAGAAACTACTACCTTGCAAATCTCATAAATGTGAAAACATATGTCATGAAGGAGACTGTCCTCCATGCAATTACACAAGTCTTCAGTCTTGTCTCTGTGGCTCAGAAAATGTAAAGCGACCATGTAATGATCTCTTATGGCAATGTACTAAAATTTGTAAAAAACCATATGCATGTGGGTTTCATCAATGTTTGGATGTGTGTCACACTGGATCATGTGGTTCCTGCCCCAATTCTGGACTGAGATCCTGCCCTTGTGGAGCTAATCAACGTTATGTTCAATGTCCAGATACAATAGAAACTTGTCTCGGAACTTGTGGAAAGAAGCAGGAAGATTGTGTACATACTTGTCCAGAAAAATGTCATAAGGGACAGTGCCCACCATGTCAAGTACTGATTGAGAAGAAATGTCACTGTTCTACTCATACAAGATTGTTACCGTGTAGTAAAGATTTCAGGTGTGAGACAAAGTGCCGAGGTATTAGACCATGTGGAAAGCATGCTTGTGCACGAAAATGTTGTAATGGGAACTGCCCTCCCTGTGAGAAAATATGTGACAAGCCTTTGCAGTGTGGTCGTCATAAGTGCACGACAATTTGTCATCATGGACCTTGTTATCCATGCCCCAGAGAATCAAAAATAACATGCCGTTGCAAGGAAACATATATTACAGTTCCCTGTGGTAGAGAGAAGTGTATAAAACCACCAAAGTGTAATCTTCCATGTAAAATTAAATATAAATGTGGCCATATTGAAGAAAACAAACACTCCTGCCATTTTGGTGACTGTCATCCTTGCAAAGCTATTTGTAATAAAAGTTATGAAAAATGTGAGCATAAATGCAAGGCAAAATGTCATGAATATGTTACCGTCATATTTAAACAAATTGAAAAACCAGCAACACCCTGGGAGGTCCAGCCACCCAAAACTAAAGTAGTTTCATTGGACTGTCCACCTTGTGAAACCCCAATACCTGTAATCTGTTTTGGAGAACATGACACAGAGCTGCAGCCATGCCACTCAGCCTCCCGCCGCTGCTGTGGCCGAGAATGTGGTAAAGATCTTGCTTGTACCAACCATAAGTGTCCATTACTATGTCATCTATACAACCCTGATCCTAACTATCCAAAAGTGCCTTATGCATGCCGACCCTGTAATAGAGAGTGCTCTGTGCCCCGCCCAATAAAATGCTCACATAAATGTCCTAAACGTGGATGTCATGCTGGACCATGTCCCCCGTGTGAAGTGTTAGAAAGAATCAAATGCTACTGTGCTGTAACAGAATTATATTTGCGCTGTCGTGAACTATCTACTGCAACTGATGAACTATTAAGTTGCAAGCAGCAATGCCCAAAGAATTTAGAATGTGGACATAGGTGTAAGAGTCTCTGCCATAAAGGTCCTTGTGGAGAAAATATAGATTGCACAAAAAAGACAAAAATACACTGTCCCTGTGGAAATTTGAAAAAAGAAGCACCATGCAACTTAGTTCGAAAATCCGAAGTTAAAATTGTTTGTGATGCTACATGTGAAGCCAAGGCATTAGCAGCAAAATTAGAAAAAGAGAAAGAAGAAAAGAGATTGAGAGAATTAGAGGAACAAAGAAATCAAAGAGAGCTTGCAGAATATGAATGGAAATTAAGTGGCAAAAAGAAAAAATACAAGGATAAGAAAGTAGTTATTAATCAAGACAACAGAAAGTTTGTTCAAAAATATTGGCTTCCTATATTATCTACTTTAGTTGTAATTTTTGCAGGATTTTTGTATATTATTAATTTATAA
- Protein Sequence
- MARRYRDAAAKLQQNVHKHLKTMKDISSSEDEEPYETGVLEGVFQSYWRGGGDTHVINRTKNLLEEALSGRSITCLICIGSIKRADAIWTCNHCHSYFHLSCIQKWSNDSISLRSEETQGPISVVKPIKIEWCCPKCRTAYSKEEIPRKYRCFCEKTDDPPYHPWLVPHTCGEVCGKRLSLGDNCKHKCLLLCHPGPCPPCPQTVNGICYCGKEKQRVRCSAAKWSCGQPCKKLLPCKSHKCENICHEGDCPPCNYTSLQSCLCGSENVKRPCNDLLWQCTKICKKPYACGFHQCLDVCHTGSCGSCPNSGLRSCPCGANQRYVQCPDTIETCLGTCGKKQEDCVHTCPEKCHKGQCPPCQVLIEKKCHCSTHTRLLPCSKDFRCETKCRGIRPCGKHACARKCCNGNCPPCEKICDKPLQCGRHKCTTICHHGPCYPCPRESKITCRCKETYITVPCGREKCIKPPKCNLPCKIKYKCGHIEENKHSCHFGDCHPCKAICNKSYEKCEHKCKAKCHEYVTVIFKQIEKPATPWEVQPPKTKVVSLDCPPCETPIPVICFGEHDTELQPCHSASRRCCGRECGKDLACTNHKCPLLCHLYNPDPNYPKVPYACRPCNRECSVPRPIKCSHKCPKRGCHAGPCPPCEVLERIKCYCAVTELYLRCRELSTATDELLSCKQQCPKNLECGHRCKSLCHKGPCGENIDCTKKTKIHCPCGNLKKEAPCNLVRKSEVKIVCDATCEAKALAAKLEKEKEEKRLRELEEQRNQRELAEYEWKLSGKKKKYKDKKVVINQDNRKFVQKYWLPILSTLVVIFAGFLYIINL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204545;
- 90% Identity
- -
- 80% Identity
- -