Acar005057.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989978.1:6840100-6858560[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.11 10 7.1 9.8 1 23 294 316 294 316 0.98 2 9 0.037 3.6 8.6 6.9 2 23 324 345 324 345 0.97 3 9 0.018 1.7 9.6 0.6 1 23 379 402 379 402 0.94 4 9 3.7e-06 0.00036 21.2 1.0 2 23 407 428 406 428 0.96 5 9 0.0067 0.65 10.9 0.8 1 23 434 456 434 456 0.97 6 9 8.9e-05 0.0086 16.8 2.4 2 21 463 482 462 487 0.93 7 9 0.023 2.3 9.2 0.2 1 23 495 518 495 518 0.88 8 9 4.1e-06 0.0004 21.0 0.5 1 23 580 602 580 602 0.97 9 9 0.71 69 4.5 0.0 1 23 608 631 608 631 0.93
Sequence Information
- Coding Sequence
- ATGGGACTGGCCGTAGTGTATCCTGGTGTTCATGTTATCATCTTGTTCATAGTGGTTATACAAAAAATTCAATTGTTCTTTGGTTTTCAGAGTAATATCGATAATGTAAATGTGTGCTGGGAATGTCGTGGTGTTTTAATAAAGATTTCAAGATTCAAAGCACAAATAAGTATCGCTCGTGATGCTATGTTGAATTGGCTTGAAAAACCGTCACTGTCAAAATTAAAATTATCGCAATGTTTAAAGATTGATTGCTCAAGTGTATATGAAGAGAGTACAGATTCTAAACATGTTACATTTATCAAGACTGAAGATATATTCCAGTGTAATGTGTCACAAAATGGAAAGAATATGTCACAAAATGGATATGACATGTCACAAAATGGACACGATATGTCACAAAATGGACGCGATATGTCACAAAATGGAAAGGATATGTCACAAAATGGATTTGATGTGTTACAATGTGGTGATGCCTTGTCAAAAAATCTGTATATTATGACAGATGATGACGTTAAAATTGACGTATTTAGTCATAATGATATTGAGAGTGAATTTGATGATGTTGAGGTTTTTGAGAATGATTATGAAAATTTAAACCTAGATGGTAAAATAATTAAAACAGTAGACGAGTTTGACGAGTCAGACGACGAGCCTCTCGGCAATAAAAAAGAGAAGAAACACAAAGGAAAAAGACAGAAGAAAGAAGGTAAGAGAAGAGAGAAAGCTCCAGGAGTCGTGAACAACGCGAGGGTGCTGAAGAAGATGCAGCAGCTCAACGTCAGCGGCGACCACCTGGAGATGGTCGTCTTGAGCTGGGAGGAGGTGGAGTCGGAACGGCAGAGTAGTATAGCGAGTGAGAAGTTCACGCGGCACGCGCACAAGTGTCACCAATGCGCGCTCGGCTTTAACCATCGGTGTAAATTGGAAGAGCATATGAAGAAACATCAACCGTCGGCAGGCGGCGCCGAGTGCGAAGTGTGTCACATATTCTGTAAGGACCAGCAGGCGCTCTGCTCGCATCGCCGGAGACACAGGGTCAGATGGCGCTGCCGCCTGTGCGGCGGGGCGTGGTCGCGGGCGAGCGTGGCCGCCGACCACGTGCACCGGCTGCACGGCGCGCCGCCGCCCACGCACGCCTGCGCCGTGTGCGCGCACGCCGCCACCACGTTGGGCCAACTGCGGAATCACATGAAGAAGGCCCACTCGGAGCAGCTCAAGTGCGAGCTCTGCGGGAAGATGTTCCGCGACAGGACCTCGCTGAGGACGCATCTCTTTATACACCGCGGGGAGAAGGAATACTCTTGTCCGAAATGCAACAAACAGTTCCTGTTCAAGAAAGCGATGGAGATACATTTGGTGACCCACGAGTCCCCCGCGAACGTGTACTGCCACGAGTGCGACATGACGTTCAAGAACCAGATGTCGTTCAACCAGCACATGAAGTACAACTTGAAGCACATCGACCCGGCCAGACTCAAACACGCGTGCTCCGCGTGCGGCAAGCGGTTCGTGAAGGCGGCGCGGCTCGAGGAGCACAACATGGCCGTGCACCTCAAGCTGGCCCCCGTCGGCTGCCCCGCGCCCGGATGCCGCTTCGTGATCCGGCTTGCTTGGCTTGTCTGGCTTGGCTGGCTGGCTTGGCCCGACTGTGCTCGTGTGTTGCAGGCGGGCGCGTCGCGCGCGGCGCTGCGCTCGCACCGGCGCGCGGCGCACGGGGCGGCGCGGCGGCGCGACCACGTGTGCGACGTGTGCGGGAAGGCGTACACGACAAAGAAGAGCCTGGAGGGCCACCTGCGCGCGCACCGCGGCGAGCGGCCCTTCCGCTGCGGCGCGTGCCCCGCCGCCTTCGGGTACGAGGCCGCGCTCTACAACCACAACAAGCTGGTGCACTTGAAGCGAAAGGTAAATCGCAGTCGAGCTCAGGCGAATTCAGCTTGGCTCGTCGTGGACGTTCCTAATGTACAATAA
- Protein Sequence
- MGLAVVYPGVHVIILFIVVIQKIQLFFGFQSNIDNVNVCWECRGVLIKISRFKAQISIARDAMLNWLEKPSLSKLKLSQCLKIDCSSVYEESTDSKHVTFIKTEDIFQCNVSQNGKNMSQNGYDMSQNGHDMSQNGRDMSQNGKDMSQNGFDVLQCGDALSKNLYIMTDDDVKIDVFSHNDIESEFDDVEVFENDYENLNLDGKIIKTVDEFDESDDEPLGNKKEKKHKGKRQKKEGKRREKAPGVVNNARVLKKMQQLNVSGDHLEMVVLSWEEVESERQSSIASEKFTRHAHKCHQCALGFNHRCKLEEHMKKHQPSAGGAECEVCHIFCKDQQALCSHRRRHRVRWRCRLCGGAWSRASVAADHVHRLHGAPPPTHACAVCAHAATTLGQLRNHMKKAHSEQLKCELCGKMFRDRTSLRTHLFIHRGEKEYSCPKCNKQFLFKKAMEIHLVTHESPANVYCHECDMTFKNQMSFNQHMKYNLKHIDPARLKHACSACGKRFVKAARLEEHNMAVHLKLAPVGCPAPGCRFVIRLAWLVWLGWLAWPDCARVLQAGASRAALRSHRRAAHGAARRRDHVCDVCGKAYTTKKSLEGHLRAHRGERPFRCGACPAAFGYEAALYNHNKLVHLKRKVNRSRAQANSAWLVVDVPNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -