Basic Information

Insect: Anthocharis cardamines
Gene Symbol: zfh1
Assembly: GCA_905404175.1
Location: FR989978.1:4476993-4490836[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.016 1.5 9.7 0.6 1 23 244 266 244 266 0.98

2 11 0.00061 0.059 14.2 0.9 1 23 273 295 273 295 0.99

3 11 3.9 3.8e+02 2.2 1.8 1 9 299 307 299 322 0.74

4 11 0.18 17 6.4 2.1 1 23 329 351 329 351 0.99

5 11 0.00016 0.016 16.0 2.1 1 23 357 379 357 379 0.96

6 11 0.00014 0.014 16.2 1.8 1 23 385 408 385 408 0.97

7 11 0.0032 0.31 11.9 2.0 1 21 413 433 413 438 0.92

8 11 0.15 15 6.6 0.8 1 23 446 469 446 469 0.93

9 11 0.00037 0.036 14.9 0.4 2 23 476 498 476 498 0.97

10 11 6.7e-07 6.5e-05 23.5 1.4 1 23 507 529 507 529 0.98

11 11 0.01 1 10.3 0.5 5 23 538 557 536 557 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.016	1.5	9.7	0.6	1	23	244	266	244	266	0.98
2	11	0.00061	0.059	14.2	0.9	1	23	273	295	273	295	0.99
3	11	3.9	3.8e+02	2.2	1.8	1	9	299	307	299	322	0.74
4	11	0.18	17	6.4	2.1	1	23	329	351	329	351	0.99
5	11	0.00016	0.016	16.0	2.1	1	23	357	379	357	379	0.96
6	11	0.00014	0.014	16.2	1.8	1	23	385	408	385	408	0.97
7	11	0.0032	0.31	11.9	2.0	1	21	413	433	413	438	0.92
8	11	0.15	15	6.6	0.8	1	23	446	469	446	469	0.93
9	11	0.00037	0.036	14.9	0.4	2	23	476	498	476	498	0.97
10	11	6.7e-07	6.5e-05	23.5	1.4	1	23	507	529	507	529	0.98
11	11	0.01	1	10.3	0.5	5	23	538	557	536	557	0.91

Sequence Information

Coding Sequence: ATGGAATACACCGAAAAACTTTGCCAAACCTGTTTGCAAACCAGTGAAAATTTAAATCCTATGAAGATAGAAGATAAAAAGTTGTTTAAAAGACTAATAGTAAAGATGGATAATGAAAACAAATTGTCTCTATGTATACTATGTCAACACATGTTGAGGAAGATTTCGAAATTTATAAGACAATGTGAATTAGCACAGGATTACTTGCAAAGCTCATTGGAACAGGGTTATAATATACCTAACATCAAGCTGGTCTTCAATCTCACGACATCAGAAGTAAAAACAGAATTTCACGGAACAGTTTTAACATCAACTGTTAAAGACGAGTATAATTCCGATGAAGATAATTTACCATTGGTGTTTCTGACTAATGATAATGATTCGGAGAACTCCAATGATCACCAAAGAGCAGTATCACCGAGTCAGATCAAAGACGAAGAGGTTATTCTTCAAAATCCCATTTCTGATACTAAAATTGTTTCATGTAAATTGAATCCAGTTCAGAGAAAGGACACAAAAGTAAAAGTCAAAAATAAAAGGTTTAATAAAAAACTATATAAAGATAAGCGCCAACGACAAAAAACTAAAAATGAGGAGATGCCCGCTGGGTTTTCATCTAGAATGGTCCGTGAGACCGAAGAGTATACTGTGATTAAGCTGACTAAAGAACAGGTTTTGGAAGAAATGAAAAATAACAAGGAAACCAATGAAAAATATAAAGAGGCGCCATACAAGTGCGAACTGTGTGTCAAATACTTTAACTTCGAGGATGTGCTGAAGGGACATTTGGAGAAACATTCGCCTAAAAATGGCGCATTTCAATGTGAGATATGTTCTCAATACTGCCCCAGTGCCGTCTCTCTGAGGGGACACATGAAATCACATACAACCAAGTATAAATGCAAAATATGTCACATAGTACGACTATCTAGACAACATATATTGGAGCACTATGTATTACATCACACGGAATATATGCCAGATTATAGATGCAGTGCATGTTCGTTTACGACAAATAAGCGTACAGTGATGCAGCGTCATGCGCGAACGCACTCCGAGAGTGGGGAACACACCTGCCTCGAGTGCGGGAGAGGTTTCAAGAGCAGGGAGACGTTGCGGGTTCACTCTACCCGTCACGACGTCAGAAAGCGGTTTCCGTGCGACGCGTGCAAACGATCGTTCATATTCAAGTCATTACTTCACAAACACGTTCGTTCCGTGCACATAGACAAGGATTTCTACTGTGTAGAATGTGATACTAAATTTACGTCTATGGAGGCTTTGAAGCAACATTTCAAACGCAGTAAAAAACACAGTGATCCATCGCACTATAGATACGAGTGTAGTTTATGCGAAGAAAAGTTCCTCACGAAAGCGAGGCTAGCGCACCACGAGACGAGCGTGCACAGCCTGCCCAAGACCGCGCGCTGTGAGCACTGTAGCCGCGTATACAGTGGCGCCGAGGCGCTGAGGTTGCACGTGCGAAGAGCACATCCGACCGGTGAGAACAGGACGGAGTATCACTGCGGAGTTTGCTTTAAAGTGTTCACTCGTAAGGCTGGGCTGAAAGTTCACATGAGGATCCATACTGGGGAGAGGCCGTATGGCTGTCACTGTGGTGACTCCTTCACTCAGCAAGCCTCGCTGAGAGCGCACCAGGCGGCCAAACATAAGTATATATACAACATCTCGACATCAACCACTGGGGCCTTAGAGCCGGCCAGTCAGCGGTTCGACTGGTCGAGGATCTTCCCTTTAGGTTGGAGGAAGACCACACTTCCCTTCCTCCACAGGACCATCCGTAAAGTACGTCTCACAAGGGGGGGAGTTGAACGACAAAGTGTGGAATTGTGTGACAAGAGATGGGAGGGGTTCTAG
Protein Sequence: MEYTEKLCQTCLQTSENLNPMKIEDKKLFKRLIVKMDNENKLSLCILCQHMLRKISKFIRQCELAQDYLQSSLEQGYNIPNIKLVFNLTTSEVKTEFHGTVLTSTVKDEYNSDEDNLPLVFLTNDNDSENSNDHQRAVSPSQIKDEEVILQNPISDTKIVSCKLNPVQRKDTKVKVKNKRFNKKLYKDKRQRQKTKNEEMPAGFSSRMVRETEEYTVIKLTKEQVLEEMKNNKETNEKYKEAPYKCELCVKYFNFEDVLKGHLEKHSPKNGAFQCEICSQYCPSAVSLRGHMKSHTTKYKCKICHIVRLSRQHILEHYVLHHTEYMPDYRCSACSFTTNKRTVMQRHARTHSESGEHTCLECGRGFKSRETLRVHSTRHDVRKRFPCDACKRSFIFKSLLHKHVRSVHIDKDFYCVECDTKFTSMEALKQHFKRSKKHSDPSHYRYECSLCEEKFLTKARLAHHETSVHSLPKTARCEHCSRVYSGAEALRLHVRRAHPTGENRTEYHCGVCFKVFTRKAGLKVHMRIHTGERPYGCHCGDSFTQQASLRAHQAAKHKYIYNISTSTTGALEPASQRFDWSRIFPLGWRKTTLPFLHRTIRKVRLTRGGVERQSVELCDKRWEGF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -