Acar005918.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989976.1:3107005-3114623[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.43 42 5.2 3.1 1 21 159 179 159 180 0.95 2 12 0.15 15 6.7 0.2 2 23 214 236 213 236 0.93 3 12 1.2 1.2e+02 3.8 1.7 1 23 240 262 240 262 0.92 4 12 0.12 12 6.9 7.0 2 20 266 284 265 286 0.92 5 12 0.00037 0.036 14.9 2.2 2 21 505 524 504 525 0.93 6 12 0.0097 0.95 10.4 1.1 2 23 559 581 558 581 0.96 7 12 2.1e-05 0.0021 18.8 0.1 1 23 586 608 586 608 0.98 8 12 2.2e-05 0.0022 18.7 0.2 1 23 658 681 658 681 0.94 9 12 0.001 0.099 13.5 0.4 1 23 687 709 687 709 0.92 10 12 0.021 2 9.4 0.2 1 23 715 737 715 737 0.98 11 12 0.0019 0.19 12.6 0.6 1 23 743 766 743 766 0.94 12 12 0.00019 0.018 15.8 2.9 2 23 773 795 772 795 0.96
Sequence Information
- Coding Sequence
- ATGACTAGACAAGTAGATGTAAAAGCTATAGTATCCCACATAGTACGAGGCGATGGTTTGGATAAATGTCGTATATGCATGGGAAGCACGAAAGAAGGCCAAGTATTCCTGGGTGATACGGTCATGATGGATCAAGGAAAACCTGTAACTCTAGCTGATGTTCTTGAAGGCATCACAGGAACGCAGGTGCCGTTAGAAGAGGACCTGCCTAAAGGACTTTGTTCAACATGTTTCCAATCAGCTCTGATTGCTGCTAACTTCAGATTACTCTGCCGTCAGGCAAATACCAAATGGAACATGCTTATTGAATCAATTCAAAATTTACCAGAATACACAGATTTGCAGAAGAATGTATTGTTTGCTTTCATCAGTAACAATGAAATGACAGTTATCAATGATTATCCAGAATCAGTACATAAAAAAACTATCATTAAAAAATTGGGGGCACAACATTCTCAAGCTCTGAAGACAAAGTACACGTGTTCAGAATGTTGTAAAACATTTCAGTATCCGCAACAGTTCTATGATCATTTGAAAGAATCTCCTGACTTGAAGCGAGCATGCTATATTTGTGGGGAAGTCATGCAGATGAATGAATTGCTTATTCATTTAACTAAAGTTCATAGTATCCAGGCAATTGAGTGTAAAGCTTGTCCAGCATTATTTTCTACTCAAGATCAATATGACAATCATACAGCAAAGTTCCATACACAAAGATTTATTTGTATTGACTGTGGTCTTACATTCCAAACAGCTAATGCACACCATGCCCATATGTCCAAACATACACAAAAATCATGTCCACAGTGTGACAAACAATTTCGCAACCAGAAGTGCTATTTACATCATTTTAAGCATTGCAAGGAACATAAAATCAGGCAAAATTCATTATTAAAGACACAACGAGTTGGAGTGGTGGATGATCTGGAATTACCCCGCGGGCTGTGTACCTCCTGCTCCAACGATGCAACCACATGTTGGAACTTTAAAAAACTCTGCTTAGATTCATCTAACAATTGGGCACGAGGGGCTACCATCCTACCTGAAAACCACAATGACCTAAACACTTGTACTCTATTCATCTGTTTTGATACAAATACCACTGTCAAGGATAATGGAATCGTAGGCAATCCAGTTTTAGCAGCAGCCAGACTGAATTTTATAAATGGTTTATCAAATGCCTGTGATTTGAATATGTACAACGAGGAGCTTTGCCCCAATGGTGTATGTGCCGCTTGCACCAATCTAGCTATATCTGCCTTCGAGTTCCGAGTTTTAGTCAAAAACTCACAAAATTTATGGATAAACTGTTTCAATTCAATAAACCTTCTAGAAAGTGAAAAGTGTTCTAAATCTCTATACGTTATTTTTAACGATAACCTCTCGTTGCATAGTACAAAAACCTACAACGGCGATATGAAAGATTTTGTTAAGGATTTTATGAATCAACCCAAAAGTTTCTATGAAAAGCAAGATAAGAAACAAAGAGTGTCCAGAAATGGACCAAATTGTTCCTGTAGTGATTGCGGAAAGGAGTTCCACAGTCCGTATTATTTGAACTTGCATTTGAAAAACAGTAGCCAAAAGGAAGCGTGCTGGCTCTGTGCTACTATATGCGGCAGAGGCGAAAAAATGCAGAAACATATGGCAAATGTACATAAAATTGAGATGCTCTCGTGTAAAGAATGCCCACTGCTACTCAAAACTGACGCAGACTTGGAAAGGCATATGAAAAAGTGTCATACGGGAAACGTATATACTTGTGCCGATTGTGGCAATGTTTTTAATAGACAAGCATCGCTAGAGCTTCATGCTCAAATGCACGTGGTAAGAATGTGTAGAGTTTGCGGTGCGCAATACTCAAATCGCGGGTGTTACCGCTTTCATAGATCCAAATGTGAACCAGACGCGAAACCCGATTTAAAATCGTTACCCCGAAATAAACGTTCCAATGTACGTGACCCAGCAACATTTATTTGCGATTATTGTCAAAAAACTTACCCCACTCGACCACAATTACAAAATCATATCATTTGGATTCATATGGATAGACGACCTCATCAGTGCCAATGGTGTGGAAAGAGGTTTTATACCGCTGCGCGTCTAGCGGAACACAGTGTTGTGCATACGCGGGAACGGAAGTTCAGCTGTGACATTTGTGGCGCGAAATTAGTATCTAAGATGGCCGTCGTGTACCATAGACGACGTCACACGGGTGAGAAGCCCTATGAATGCGAAGATTGTGGTGAAAAGTTTATTTCATCGTCAAGGAGGTCTGATCACGCAAAACGAAAACACGATAAAGGGATTAAACTTGAGTGTAGTTTTTGCAAGTCTACTTTTGTACGAAATCATGAGCTTCAAAAACATATAAAAAAGGTGCATTGGTTGGATGATAATTTGAAGAACGAGAATGAAATTGTTATAGATTAG
- Protein Sequence
- MTRQVDVKAIVSHIVRGDGLDKCRICMGSTKEGQVFLGDTVMMDQGKPVTLADVLEGITGTQVPLEEDLPKGLCSTCFQSALIAANFRLLCRQANTKWNMLIESIQNLPEYTDLQKNVLFAFISNNEMTVINDYPESVHKKTIIKKLGAQHSQALKTKYTCSECCKTFQYPQQFYDHLKESPDLKRACYICGEVMQMNELLIHLTKVHSIQAIECKACPALFSTQDQYDNHTAKFHTQRFICIDCGLTFQTANAHHAHMSKHTQKSCPQCDKQFRNQKCYLHHFKHCKEHKIRQNSLLKTQRVGVVDDLELPRGLCTSCSNDATTCWNFKKLCLDSSNNWARGATILPENHNDLNTCTLFICFDTNTTVKDNGIVGNPVLAAARLNFINGLSNACDLNMYNEELCPNGVCAACTNLAISAFEFRVLVKNSQNLWINCFNSINLLESEKCSKSLYVIFNDNLSLHSTKTYNGDMKDFVKDFMNQPKSFYEKQDKKQRVSRNGPNCSCSDCGKEFHSPYYLNLHLKNSSQKEACWLCATICGRGEKMQKHMANVHKIEMLSCKECPLLLKTDADLERHMKKCHTGNVYTCADCGNVFNRQASLELHAQMHVVRMCRVCGAQYSNRGCYRFHRSKCEPDAKPDLKSLPRNKRSNVRDPATFICDYCQKTYPTRPQLQNHIIWIHMDRRPHQCQWCGKRFYTAARLAEHSVVHTRERKFSCDICGAKLVSKMAVVYHRRRHTGEKPYECEDCGEKFISSSRRSDHAKRKHDKGIKLECSFCKSTFVRNHELQKHIKKVHWLDDNLKNENEIVID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -