Basic Information

Insect: Anthocharis cardamines
Gene Symbol: -
Assembly: GCA_905404175.1
Location: FR989977.1:1324615-1351318[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00046 0.045 14.6 1.6 1 23 343 365 343 365 0.97

2 9 1.5e-06 0.00014 22.4 1.5 1 23 371 393 371 393 0.99

3 9 1.4 1.4e+02 3.6 0.3 7 23 499 515 499 515 0.89

4 9 1.9e-06 0.00019 22.1 0.1 1 23 521 543 521 543 0.98

5 9 5.9e-06 0.00058 20.5 2.0 1 23 549 572 549 572 0.96

6 9 3.4e-05 0.0033 18.1 6.2 1 23 578 601 578 601 0.97

7 9 2.7e-05 0.0027 18.4 0.8 2 23 608 629 607 629 0.97

8 9 4.3e-05 0.0041 17.8 0.3 1 23 635 657 635 657 0.97

9 9 0.0031 0.3 12.0 0.5 1 23 663 687 663 687 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00046	0.045	14.6	1.6	1	23	343	365	343	365	0.97
2	9	1.5e-06	0.00014	22.4	1.5	1	23	371	393	371	393	0.99
3	9	1.4	1.4e+02	3.6	0.3	7	23	499	515	499	515	0.89
4	9	1.9e-06	0.00019	22.1	0.1	1	23	521	543	521	543	0.98
5	9	5.9e-06	0.00058	20.5	2.0	1	23	549	572	549	572	0.96
6	9	3.4e-05	0.0033	18.1	6.2	1	23	578	601	578	601	0.97
7	9	2.7e-05	0.0027	18.4	0.8	2	23	608	629	607	629	0.97
8	9	4.3e-05	0.0041	17.8	0.3	1	23	635	657	635	657	0.97
9	9	0.0031	0.3	12.0	0.5	1	23	663	687	663	687	0.92

Sequence Information

Coding Sequence: ATGGAGGAGTTGAGAAAACCAAACTCAACATATTTGATACTAAGACTTAATGAAATGAAAGCGGATATCCGCCATAACATAATCAGATCCGAAGATATACGTATAGCACAGGAGAAAATAAAGAAAGAGGCAACAATTAATGAAAGGAGTGGGCAAATCGGGGACAATGTAATGAAAAGAGTTCAGCCAAAAGTCTCCTCCTCGAAACTGTTGCAAACGACAACCGTAACAACACCGACAACAACACAACAACAATTCGAACAACAAAATGATATTAAAAACCAAATAGCAACAGAAATGCCAATCCTCCTACCAAACGATATAAGTACACTATTGGATAAGAAAGATTTCAGTTTGAATGATTTTGTTGTTGTGAAGGAAACTAAAGATGATGAAAATAATGATGATCATCCGATGGAAATTGATGAAGGTGCAATGATAATGGATGCTGAGAACGCCTCAATAATCAGTGTTGTCTCACATCAAAAGTTTTTATATGGCAACTCTGAGATATCGCTCGTGATGCCGCACGCTGGGGTTGCCATGGATCAACAAGACGACGGACAGGATTCCAATTCGGAATCGCACATAGAATTACAAGTGTCTGGAGACGAAGAGACAGCCAAGGCTATAATAGCGGCCGCCACCGAACAAGGTGGGACCTTTATAAAGGTCGGTAGCGGGGAAATGTTCGAAGTGAAATCTATCGAGAGTAAGATACAAGACACATACAAGACTGGCGAGGATCCTCTAAGGTTAGACGATAACATGGTGGAAATTGCGGACGGACAATTTAAATGTCTGTTTTGTGAGAGAAGCCAGAAAACAGTAAAATCAGAGCCCGTTCTAGGCAAAGCGGAATGGATGATGGAACATTTGAAAACGGTACACTCGGCCAGACTATACATATGCAACTGTGGCGCTATTATACGCAAACGAGTGGATTATTCGGCTCATTTAGAAAACCACGCGGACAAATTGAACAACCTCCTAAGTCCCCAAGCCGCGGAGAAACTGAGCAAACTACACGAATGCGAAATTTGTAAGAAGAAATTCAGCTCTCGGCTAGTTCTATCGGGGCACATGAACATGCACACGGGCGAGCGGCCCTACACCTGCGACGTGTGCAACAAGAGCTTCGCGTCGCGATACACGCAGCAGGCGCACATGAAGACGCACGCCAGCTGCGGCTACACGCAGCAGACGCACATGAAGACGCACGCCAGCTGCGGCTACACGCAGCAGACGCACATGAAGACGCACGCCGTGAGTATCTGTATAGAGCTGTTACAACCGTATTGCGTATATATATATAGAGCTGTTGTTACAACTGTATTGAGTATCTATATAGAGCTGCGGCTACACGCAGCAGACGCACATGAAGACGCACGCCGAAAGACCACGCCCTTTCAAATGCAACGAATGCGGCAAATCTTTCTTCACGCAGCACAATCTGAACCACCACGAGAAGATACATTCGGGAAACAAAGACTTCATAAAGCATTCGGTACTCAACATAACTTAGAAGTCCATGGTGTAGTACATTCAGGGTTGAAACCGTTTGTGTGCACCGTGTGTGATAAGGGCTTCGCGAGACGCGCTGAAGTAAGAGATCATATGAGGATTCATACAGGTGAACGTCCATTCGAGTGCGAAACTTGTGGTGCGAGGTTTTCCCAGCGATCGAACCTACACTCGCACAGGCGCGCGACTCACCTTAACGACAAGCGTCATCAATGTCCCCACTGCTCTAAGAGATTCAAACGTCGCCGTTTACTAGAATACCACATAAAGTCGTCGCACACCGGCGAGCGGCCTTTGAAATGCGAAGTTTGCTCCGCGACTTTCATATATCCAGAACACTATAAGAAGCATATCCGAATTCACAGCGGGGAAAAACCATATGTTTGCGAGGTTTGCGGCAAGGGTTTCAACTCGCGCGACAACCGCAACGTGCACCGTTTCGTGCACAGCGACCGCAAGCCGTACGAGTGCGTGCTCTGCGGCGCCGGCTACATGCGCAAGCACCTGCTCTACCAGCACATGAACTCCACGGGCCACCTCTCCGAGTCGATAGTTGTGAACCAACCTCGCGTCAATCAGATCGAGGATGAGGAATCAAAAATACAATCTGTTATAATCAGTGAAGACAATAAGGATGACGAATTAATGAATGCGGTGTATGAAACGGAAGCATTGCAAGTGTTAGCTGCGAATGATAAAGACGATACAACTCGCGGACGGCGGCTGCGGCTGGGTCGCGGTCAGTCAGTAGACAGACATACAGACACTGGTGCTTCCTGGGAAACGGTGCTGGTTCCTGGAAGATCTTGGGTTCCAACCCCGGGGTAA
Protein Sequence: MEELRKPNSTYLILRLNEMKADIRHNIIRSEDIRIAQEKIKKEATINERSGQIGDNVMKRVQPKVSSSKLLQTTTVTTPTTTQQQFEQQNDIKNQIATEMPILLPNDISTLLDKKDFSLNDFVVVKETKDDENNDDHPMEIDEGAMIMDAENASIISVVSHQKFLYGNSEISLVMPHAGVAMDQQDDGQDSNSESHIELQVSGDEETAKAIIAAATEQGGTFIKVGSGEMFEVKSIESKIQDTYKTGEDPLRLDDNMVEIADGQFKCLFCERSQKTVKSEPVLGKAEWMMEHLKTVHSARLYICNCGAIIRKRVDYSAHLENHADKLNNLLSPQAAEKLSKLHECEICKKKFSSRLVLSGHMNMHTGERPYTCDVCNKSFASRYTQQAHMKTHASCGYTQQTHMKTHASCGYTQQTHMKTHAVSICIELLQPYCVYIYRAVVTTVLSIYIELRLHAADAHEDARRKTTPFQMQRMRQIFLHAAQSEPPREDTFGKQRLHKAFGTQHNLEVHGVVHSGLKPFVCTVCDKGFARRAEVRDHMRIHTGERPFECETCGARFSQRSNLHSHRRATHLNDKRHQCPHCSKRFKRRRLLEYHIKSSHTGERPLKCEVCSATFIYPEHYKKHIRIHSGEKPYVCEVCGKGFNSRDNRNVHRFVHSDRKPYECVLCGAGYMRKHLLYQHMNSTGHLSESIVVNQPRVNQIEDEESKIQSVIISEDNKDDELMNAVYETEALQVLAANDKDDTTRGRRLRLGRGQSVDRHTDTGASWETVLVPGRSWVPTPG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -