Basic Information

Insect: Anthocharis cardamines
Gene Symbol: -
Assembly: GCA_905404175.1
Location: FR989972.1:4724508-4737646[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3.6e-05 0.0035 18.1 0.4 1 23 235 257 235 257 0.99

2 12 0.0097 0.95 10.4 1.9 1 23 265 288 265 288 0.93

3 12 4.8 4.7e+02 1.9 0.4 1 21 292 312 292 315 0.73

4 12 0.00017 0.017 15.9 1.4 1 23 378 400 378 400 0.99

5 12 0.23 22 6.1 1.4 1 23 408 431 408 431 0.97

6 12 5.9e-05 0.0058 17.4 1.8 1 23 462 485 462 485 0.98

7 12 0.0096 0.93 10.4 2.1 1 23 489 512 489 512 0.91

8 12 7.2 7e+02 1.4 0.1 2 19 534 551 533 553 0.91

9 12 0.45 43 5.2 0.3 3 23 604 625 603 625 0.93

10 12 2e-06 0.00019 22.0 0.6 1 23 634 656 634 656 0.98

11 12 0.0014 0.14 13.0 0.2 1 23 662 684 662 684 0.96

12 12 4.2e-06 0.00041 21.0 2.0 1 23 690 713 690 713 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3.6e-05	0.0035	18.1	0.4	1	23	235	257	235	257	0.99
2	12	0.0097	0.95	10.4	1.9	1	23	265	288	265	288	0.93
3	12	4.8	4.7e+02	1.9	0.4	1	21	292	312	292	315	0.73
4	12	0.00017	0.017	15.9	1.4	1	23	378	400	378	400	0.99
5	12	0.23	22	6.1	1.4	1	23	408	431	408	431	0.97
6	12	5.9e-05	0.0058	17.4	1.8	1	23	462	485	462	485	0.98
7	12	0.0096	0.93	10.4	2.1	1	23	489	512	489	512	0.91
8	12	7.2	7e+02	1.4	0.1	2	19	534	551	533	553	0.91
9	12	0.45	43	5.2	0.3	3	23	604	625	603	625	0.93
10	12	2e-06	0.00019	22.0	0.6	1	23	634	656	634	656	0.98
11	12	0.0014	0.14	13.0	0.2	1	23	662	684	662	684	0.96
12	12	4.2e-06	0.00041	21.0	2.0	1	23	690	713	690	713	0.98

Sequence Information

Coding Sequence: ATGTTTCAATTAAGGGCATGTGCTGTGTGCTTGAGTACTGATGTAAAATTTGTGAATATAGACAGTGGTCAGTTGAGACACGATTACAATCTTATTTCCGGACTTAAGACACACAAAGGAGCTGGTCTGCCCGAACACCTGTGTATGGAGTGTGAAGCATATGTCAAAAAATTTATGAAGTTTCGAAATAAATGCCAAAGAGCATATTACACATTACTAGAGATATTAGATAGCAACCGTGAGATTACAGAACCAGTATTAAAAGAATTAGATAGACAAAGACTTAAAATTAGTCCCACCTTATCTTACTTAAATGAAAACAACCTACGCATAAACTATGAAATTGTTAAGTTTAAATGGACAAAGGATAGTCGATTCCCAACTGAATCAAGTAATATATATACATTGCATCATAGTACTCATTCTGATGTCATAGAAGTGCCTAAAAATCAGTCAAAACCAGATATCTTAAGTCAAGCCACTGAACAATTGAATGAATCCAATGTATTTAGTGATAGTAAAGAAGAGACCCTATCGGATTATTTCGATAATGATATAGAAAATAATGATCTTACACAAAGAATTGATAATGATGATGTGGATGGCACTCAATTAGATGAAGAATTTGCTAGTGTTGTGCCAATTTCAAAGAAGGAAGCCATGGCAGTGATGGAGATATATAAAATGTTCTCACAAGGCAAGTTTCAGTGTGAAGTTTGCAAAGAAGCGTATTATACGGAGGCTCGGTTAAAAGTGCATATGAGAATGCATGATACACATATAAGCGGGACTTATTTTTGTGATTTATGTAGTTTCTACTACAAGACTCCTTTCCAATTGAAGACGCATATATCAGGAAAACACACATATAAATACATCTGTAAGAAATGTCCGGAAGTTAATTTTGATCGTACCTCAGCAAAATCTCACTATATATGGACGCATCTTAAGGATCCTAAAATGTCGAAACCCATATTGATCCGGAAGAGAAAGGCAAAGGATGAATTTCATAATATACAGAGAAAGAAGAAACTACCCTCAGACTTCCCCATTTATTCAGCCGTGACCCAAGAAGAGCAGTACAAGCTTGTAAAAGAACGGCAGCATACAAAGAATTACATAGAATCTCCGTTTAAGTGTGAACTATGCTATAAGGGCTTTAGGGAGCCTGCCACGTATGACAAACATATGAAAAAGCATGACCCGTCAGTATCCGGCCAGTACCAGTGCGATGCGTGCAAGATTTACGTGAAGAACACTCGGCAGATGTACAAGCACATGACTATGAGCCACCTGCACAAATTCTCCTGTCAGGCTTGCGCGTTCACTTCCTTCTGTAGAGGTCAAGCCAAGATGCATTACAGATGGCATAAAAACGTCACTTACTCCTGTCCACATTGTAACAAAGAATTCGTGAAAGCATCGACTCGTCTAACCCACATACGAATAAAGCACCCGTCTTCCTTCATTTGTACGATCTGTGGTCATAGTTTCGTGAGTGAGTCGGGCTTGTACTGTCATAAGAAGATCGCTCATACAATGGAGGAAATGGAAGCAAGTTCAAAACAAGAGAAAGAAGTAAAGACAGACAGTCCCCTGTACTGTGCGGAGTGTCGCATGCAGTTCTTCAGCGAAGCCGCCTTCGTCACGCACTTCGGTAGCTCCAACAAGCACACATCCACCAATCTATCGATAAAGCCCGCGAAGGCGGATCTGGAGGGCGTGGCGGCGCTGCACCGGCGCGCGCGGGGCCGGCCGCGCCGCGACGCGTCCGACGTGCTCAACAACGGCACCACCACTGCGGGCAACTGCGATATTTGCAAGAAGTACCTGTCGAACGACGTGCAGGCGCGCAAGCACTACCAGGCGGAGCACCCGGGGGCGGAGTACCTCAAACGGTACATGTGCGACATCTGCGGACACACCACTAAGCAATACGCGAACCTGATAGTGCACATGCGCATACACACGCGCGAGAAGCCCTACGCGTGTCCCTTCTGCGACCGCCGCTTCAGTATGGTCAGCAACCGGGACCGGCACATCGTGGTGCATACGGGTGAAAAGCGTTACGAGTGCCAACATTGCAACCGTCGCTTCACTCAGAGCAGTGCGGTCAAACTGCACATACAGACGGTTCACCTGAAGATCCCCTACGCGCCCTGGGACAAGAAGAACAGGAAGAGAAGAAAAGAGATGGAGTCATCGCTCGCCTCTGTCTCGCAGCCGAAGGTCGCCGATAACGCGCAGGGGGAGTACATCAATGCTTATATGTTTAATTTATAG
Protein Sequence: MFQLRACAVCLSTDVKFVNIDSGQLRHDYNLISGLKTHKGAGLPEHLCMECEAYVKKFMKFRNKCQRAYYTLLEILDSNREITEPVLKELDRQRLKISPTLSYLNENNLRINYEIVKFKWTKDSRFPTESSNIYTLHHSTHSDVIEVPKNQSKPDILSQATEQLNESNVFSDSKEETLSDYFDNDIENNDLTQRIDNDDVDGTQLDEEFASVVPISKKEAMAVMEIYKMFSQGKFQCEVCKEAYYTEARLKVHMRMHDTHISGTYFCDLCSFYYKTPFQLKTHISGKHTYKYICKKCPEVNFDRTSAKSHYIWTHLKDPKMSKPILIRKRKAKDEFHNIQRKKKLPSDFPIYSAVTQEEQYKLVKERQHTKNYIESPFKCELCYKGFREPATYDKHMKKHDPSVSGQYQCDACKIYVKNTRQMYKHMTMSHLHKFSCQACAFTSFCRGQAKMHYRWHKNVTYSCPHCNKEFVKASTRLTHIRIKHPSSFICTICGHSFVSESGLYCHKKIAHTMEEMEASSKQEKEVKTDSPLYCAECRMQFFSEAAFVTHFGSSNKHTSTNLSIKPAKADLEGVAALHRRARGRPRRDASDVLNNGTTTAGNCDICKKYLSNDVQARKHYQAEHPGAEYLKRYMCDICGHTTKQYANLIVHMRIHTREKPYACPFCDRRFSMVSNRDRHIVVHTGEKRYECQHCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKEMESSLASVSQPKVADNAQGEYINAYMFNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -