Acar002715.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989964.1:706238-711846[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00096 0.093 13.6 1.1 1 23 284 307 284 307 0.97 2 13 0.31 30 5.7 8.4 1 19 325 343 325 347 0.91 3 13 1.7e-06 0.00016 22.3 2.4 2 23 353 374 352 374 0.97 4 13 0.0054 0.52 11.2 3.1 1 23 378 401 378 401 0.95 5 13 0.0014 0.14 13.1 0.4 1 23 405 428 405 428 0.93 6 13 0.2 19 6.3 1.2 1 23 431 453 431 453 0.94 7 13 4.4e-06 0.00043 20.9 0.6 2 23 547 568 546 568 0.95 8 13 0.11 11 7.1 0.3 2 23 588 610 587 610 0.94 9 13 2.2e-06 0.00021 21.9 3.6 1 23 616 638 616 638 0.98 10 13 0.00017 0.016 16.0 3.3 1 23 643 665 643 665 0.97 11 13 7.8e-06 0.00076 20.1 1.5 2 23 672 694 671 694 0.96 12 13 1 98 4.1 0.8 2 19 702 719 701 720 0.85 13 13 0.19 18 6.4 4.5 3 19 733 749 732 754 0.94
Sequence Information
- Coding Sequence
- ATGCAAGACGAAGAAGCATTCAGTATGGTCTCAGATCAGCCATACCCAGTACTGCTGATCCCAAGAAGGTGTACATCGTTGGAAATTAACTGTGATGTTACAGATAATGTGTTTCTTGACTTGAAAATTACATCTATGGATACCGAAAACAATGTAATGACCATATTTTCTGGTTTCTGCAATGTTAAAGTTCTAGATAGTTACAGCCTTATCGCAGATGATTCATTAGAGAATCCACCAGATGTGTTTGAGGAAGCCACTCTCAGTACAGACCCATATGATGAACAATGGATGAACCTTGCTAGTCCTAGTGGATACAACAACTTTGATCTTATGGAATCTCAAGAGAATTATGCTGTATATCATGAATCTCACTCTAATCACATTCGAGTGGAACAAGTGAAGGCATCATCAACATACATTACTAAGAATGTATTTAACAGACCAATTAGTTATTCACCAGAACCCACATTTCAGCATAAAAAGTTCAGGAAATCAACCAGCCGTGAGAGAGAAGAAAATCAGCTGGCTGATTATGATAGTGATGATAGGCGTGGAGGATTTGCATATACAAGCTCCGATGAGATAAGCAAGGAAAGCCCAAAAGTTTTCTTAAATACAATTTCCGAACATGATCAGAGGGAAAACAGTGCCCTTAAGCAACTGATGTCATCAGATGTACAGACATCAAAGCAGAAAAAGACCATTTTGTATTTGGGCCAAAATTCCCAGAGCGGTCAGACGGTGCAGAACATTGCTATCAATGATTCATTTTTGGAGTGCGTTGACTGTGATGTAGATATGAAAGAGAACCCTAGTGATATAACCAGTTTCGGCGATAAGAAGAAATATCGGTGCGATAATTGTAAGCAGTATTTCGATCAAATTCAAGCATTTAGACGGCACATGATCATCAACCACCGCCAGAAGCCGTCCAGCGCGAGGGACTCTGATAAGAATTGCAGTTCGAAATACACTTGTAAGAAATGCAATAAAAACTGCAAATCCCGCGATAAGTATGAACAACACTGTCAAGGACACGGACATCCCGATTTAGAATGTAGCAAATGTCACAAAGTATTCGCATCCAAATACACTCTTCGCAATCACATCAAAATTCACGAAAGAAAACATCACTGTCTGTTCTGCACCCGATCCTACGAGGACGCGAGCGCCCTGAGCAAGCATATCAGCAAAATGCATTCCAGGAAACACGCCTGCCTCTACTGCCCTAAGAAATACAAAAACGAAATCGCCCTAATTAAACATGTCGATAGAATTCACTTCAAATTCATATGCAACATATGCAATTTCGGGTGCAGAATATATGAAGATTTCAAGGAGCATTTGGAGGATCATGATATAAAAAATTGCGAGTCTGATGAGGAGCTGTCCCTGGAGTGCGAGAGCGTCAGCAGCGGCACCATGGTGGAAACCAACTTTGTGCTGAGCGAGGTGTCGGCGGCGAGCGAGGCGGGTGAGGCGGGTGAGGCGGGCGAGGCGGGTGAGGCGGGCGAGGAGGGTGGGGCTAGCGGGGCGGCCGCGGCGGCCGAGGCGGACTCGGTCATAGCCAAGGTGATGTCCAACAAGATGTTCCTGATGCGACCGAAGCGCGGCAAGAAGAGGAGGAACCGGAAGGTTTGCGACGTATGCAAGAAGACGTTCGACCGACTCAGCGACTTGAAACGTCACCTGATCGAACACGTGATAAGGAGCACTCTCGCCAAGAACCCGGTCAACAAGAACGGCACGCTGACGATAACGTGCGACGTCTGCCGCACCGAGACCTTCGCCAGGATCGACAAGTACAAGGCGCACCTGCGCGAGCACGCCCAGCTCACCCTCTACAAGTGCCTGTTTTGCGACAAATCCTTCAGCGACTCGAGCAATTTCTCCAAACATAAGAAAATTCACGGAACAACCTTCTTCCAGTGCGACCTGTGCCAGCGCAAATTCAATTCGAAGAAGACGCTCGCTCTGCACATGGAGCACCATAACAAAAATCCCCCGGTCTACTGTAAATACTGCGATAAAAAATTCTATTTCGAATCGATGCTCAACAAGCACATCAAGAGTTTGCATTCGAAGGAGACGTCGCGGGTCCGCTGTCGGTTCTGCCAGAAGCAATTCAAGTCTCTGAAGGAGAAGTGGGACCACGAGTGGCACACGCACAACGTGCGCAAGACCATCGTGGACTGTCTGGTCTGCAACCTCAAGTTCCGCAAGTACTCGGAGCTGCGCCGGCACTGCCACGACACGCACCGCCTGGAGATGCCCCTGGCCAAGGTCATGTTGCAGCGGTCGTGA
- Protein Sequence
- MQDEEAFSMVSDQPYPVLLIPRRCTSLEINCDVTDNVFLDLKITSMDTENNVMTIFSGFCNVKVLDSYSLIADDSLENPPDVFEEATLSTDPYDEQWMNLASPSGYNNFDLMESQENYAVYHESHSNHIRVEQVKASSTYITKNVFNRPISYSPEPTFQHKKFRKSTSREREENQLADYDSDDRRGGFAYTSSDEISKESPKVFLNTISEHDQRENSALKQLMSSDVQTSKQKKTILYLGQNSQSGQTVQNIAINDSFLECVDCDVDMKENPSDITSFGDKKKYRCDNCKQYFDQIQAFRRHMIINHRQKPSSARDSDKNCSSKYTCKKCNKNCKSRDKYEQHCQGHGHPDLECSKCHKVFASKYTLRNHIKIHERKHHCLFCTRSYEDASALSKHISKMHSRKHACLYCPKKYKNEIALIKHVDRIHFKFICNICNFGCRIYEDFKEHLEDHDIKNCESDEELSLECESVSSGTMVETNFVLSEVSAASEAGEAGEAGEAGEAGEEGGASGAAAAAEADSVIAKVMSNKMFLMRPKRGKKRRNRKVCDVCKKTFDRLSDLKRHLIEHVIRSTLAKNPVNKNGTLTITCDVCRTETFARIDKYKAHLREHAQLTLYKCLFCDKSFSDSSNFSKHKKIHGTTFFQCDLCQRKFNSKKTLALHMEHHNKNPPVYCKYCDKKFYFESMLNKHIKSLHSKETSRVRCRFCQKQFKSLKEKWDHEWHTHNVRKTIVDCLVCNLKFRKYSELRRHCHDTHRLEMPLAKVMLQRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -