Acar004980.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989978.1:311158-312507[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 8.8e-05 0.0086 16.8 1.9 1 23 100 123 100 123 0.95 2 10 6e-05 0.0059 17.4 3.9 3 23 132 153 131 153 0.96 3 10 0.38 37 5.4 6.4 2 23 161 183 160 183 0.95 4 10 4.8e-05 0.0047 17.7 1.0 2 23 191 213 190 213 0.91 5 10 0.00076 0.074 13.9 4.8 1 23 220 243 220 243 0.93 6 10 0.00087 0.085 13.7 5.8 1 23 249 272 249 272 0.94 7 10 3.1e-05 0.003 18.3 0.3 2 23 280 301 279 301 0.97 8 10 0.0014 0.14 13.0 2.2 2 23 309 331 308 331 0.96 9 10 6.4e-05 0.0063 17.3 3.4 2 23 338 360 337 360 0.94 10 10 2.6e-05 0.0026 18.5 3.8 1 23 370 392 370 392 0.97
Sequence Information
- Coding Sequence
- ATGGCTGATCAAATGCCGGTGTACGCTGCAGGGGTTTCCTACGAGCAGAAGTATGAAAACCCATATGAACATACTCTCAAGATAGAAGACATGCAGGAATCGCAGAACTACGAGCAGAAACCGTTCGAGTCGTTGCCGGAAACCACCCAAGTGGAACCGAAGATTGAACCGGAGCCAGGCAAGCCCATACGTTTCATTAGTGTTAATAGCTCGCAGCTCACAGAAGAACAACGGGCCATGTACGAGTCGGTACTCTCCACCTGGAAACCTGTCATGTTTCCCAAAGAGATGAAGCGGTATATCTGCGAGAAGTGCAATAAGGAATTCAAAAACTATCAAAATCTCTACTTGCATACGACTAGAGTTCATTCATCTGAAGACTCGGCCGTACTGTGCAACATTTGTGATAAATCGTTCAAAAATAAACACTATTTGTACATGCATAGGATGAACAAGCACTATTCTGAGTCGGAGAAGTGCTACTGCCAATTCTGTTTGCAAGAATTTAGAACCAGACGAGCATTACACATGCATGTTAAGCGATTTCATCCGAACACCTTACCGGAACTCAAGTGCCAAGAGTGCGGGAAGGAGTTCAGTGTTCCATACAAGCTGAGATACCACATCGACGCTTGCCACAGACAAGACAAAGAAAAATACCAATGCCCGATCTGTCAAAAGCTCTACAAGAGCCATTTGAATTTGAACCGTCACCTGCACTTCCAACATTCGCAAGTTCCTCGGCATCCTTGCGTGTTTTGTGACATGACGTTTAAATCCCGGCATCACATGAAACGCCACATTTTGAACATACATCCGCCTTTAGAGTCGAAAGTCCAGTGTCCCGAATGCCTGAAGGAGTTCAAGAACGATCAGTATCTTAAAGAGCACATGCAGGTTCACTCGTCGATCGATTCGAAAGTGAAATGCGATCTCTGCGATAAATTCTTTCATTCGGCCATCCGTCTCAAGAAACACAAGAAAATCGTTCACCCGGATAAACCCAAACTGCGCTGTGAAAAGTGTGACAAGGAATTCGCTCATGCGCATTATTTGAGACGCCACAACAACTCCGTTCATATGGAGGTGGATGAAAGCCAGTATGAGCACGAATGCGAACAGTGCGGAAAGAAATTCAAAATCAAGCGGTACCTCAATAATCATCTACAAAGACATGAACAGCAACATCTGAAGAGAATTTCGCAGATGGTGAAGACTGTGATGGACGATGGAACGGAAGTGGTGAAGAAGAGAGGCAGACCGAAGCGGACGAGGAAGGAGATAGAGTTTGTGAAATGCGAACCTGTCAGCTCCGAGGAGGAGTCTGAGAGTGGATCGGAGTCGGAATAG
- Protein Sequence
- MADQMPVYAAGVSYEQKYENPYEHTLKIEDMQESQNYEQKPFESLPETTQVEPKIEPEPGKPIRFISVNSSQLTEEQRAMYESVLSTWKPVMFPKEMKRYICEKCNKEFKNYQNLYLHTTRVHSSEDSAVLCNICDKSFKNKHYLYMHRMNKHYSESEKCYCQFCLQEFRTRRALHMHVKRFHPNTLPELKCQECGKEFSVPYKLRYHIDACHRQDKEKYQCPICQKLYKSHLNLNRHLHFQHSQVPRHPCVFCDMTFKSRHHMKRHILNIHPPLESKVQCPECLKEFKNDQYLKEHMQVHSSIDSKVKCDLCDKFFHSAIRLKKHKKIVHPDKPKLRCEKCDKEFAHAHYLRRHNNSVHMEVDESQYEHECEQCGKKFKIKRYLNNHLQRHEQQHLKRISQMVKTVMDDGTEVVKKRGRPKRTRKEIEFVKCEPVSSEEESESGSESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00943106;
- 90% Identity
- -
- 80% Identity
- -