Basic Information

Insect: Anthocharis cardamines
Gene Symbol: ZNF280A
Assembly: GCA_905404175.1
Location: FR989976.1:5045349-5050091[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.04 3.9 8.5 0.7 2 23 203 225 202 225 0.94

2 10 0.004 0.39 11.6 3.0 2 23 250 272 249 272 0.96

3 10 0.01 0.98 10.4 0.5 2 23 296 317 295 317 0.95

4 10 3.9e-05 0.0038 18.0 1.8 1 23 321 343 321 343 0.98

5 10 0.017 1.7 9.7 2.2 1 13 348 360 348 362 0.94

6 10 5.3e-05 0.0052 17.5 2.4 2 23 380 402 379 402 0.91

7 10 2.6e-07 2.5e-05 24.8 1.4 1 23 409 432 409 432 0.98

8 10 0.00059 0.058 14.2 0.3 1 23 438 460 438 460 0.96

9 10 1.5e-06 0.00015 22.4 3.7 1 23 466 488 466 488 0.98

10 10 8.6e-05 0.0083 16.9 1.7 1 23 494 517 494 517 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.04	3.9	8.5	0.7	2	23	203	225	202	225	0.94
2	10	0.004	0.39	11.6	3.0	2	23	250	272	249	272	0.96
3	10	0.01	0.98	10.4	0.5	2	23	296	317	295	317	0.95
4	10	3.9e-05	0.0038	18.0	1.8	1	23	321	343	321	343	0.98
5	10	0.017	1.7	9.7	2.2	1	13	348	360	348	362	0.94
6	10	5.3e-05	0.0052	17.5	2.4	2	23	380	402	379	402	0.91
7	10	2.6e-07	2.5e-05	24.8	1.4	1	23	409	432	409	432	0.98
8	10	0.00059	0.058	14.2	0.3	1	23	438	460	438	460	0.96
9	10	1.5e-06	0.00015	22.4	3.7	1	23	466	488	466	488	0.98
10	10	8.6e-05	0.0083	16.9	1.7	1	23	494	517	494	517	0.97

Sequence Information

Coding Sequence: ATGGACTCGAGTTCTTTGTGCCGGTGCTGCCTAGCACGACCGCCGGATAAAGAGCTCGAAACATTGTACACTTGCCTTGGCAAGAAAGAAATATATGCTGACATGTTAAAAGATTGTTTTGAAATTCATCTATCAATAGAGCCATCTGCCAGAGACAATGGAATCTGTGAACTGTGCGTCACGCGTCTCCGAGACGCTTACGATTTTAAACACCAAGTGGTGCGATGCCAAAATGAGTTTCAGTTGAAGCTGTCTTCTGATGTTAATGAAGATGAAATGCTGAAAGTCAAAGAAGAAATGTCGGAAGATGGCGATAGAGACGTATTTTTTTTTGATATGAATAACGATGTGATACCAGCGATTGATACAGAACAGAAACTGGCAGAAATACTAGGTTTAAAAGATGTTACCATCAAACGGAAGAAGAAGCATAAGAAGCACATTGATGATGATGATGATCACGACAATTTACCATTAAAAATACTCCGAAAGATGAAAAAAGACGACCCCAGCCTCCCGGACAACGCGAAACACGTGTACAACGTTAAAAAAATATTAAAATATTCAAATTGCACACCATTTTTTAGCAAAACTCTCAGCGGCATTGTCTGCGCTTCCTGCAAAACTACTTGTCCTAACTTAATAGAATTACGTTCACATATCAAGGAGAAACATCCGAAAATACACCTCGGAGACAAACGCTTGGACAAAAGCAACTTGGCCTTAAAAATGGATATCACAGACTTAAAATGCAAAATTTGCTCGAAAAACGTCCATAATATAACCAATTTAAAGAAACATTTATTTACAGAACACAACGAAAAGTTCTTCCCAGATATATATGACTATATTTTCGAATTCAAAATCACAGATGGAGACATATTGAATTGCGCTTTGTGCAATTCGACTTTTGAGACGTTTAAAATGCTCTTGCAACATATGAATGGCCATTATCGTAATTATATCTGTGAAGTTTGCGATATGGGCTTCATAAATAAGCATCGTTTGAATAATCACAAGCGAACGCACGATGTGGGTAGTTTCAAGTGTTCGTTTTGCGATAAAGTCTTCAGTACTAAAGTTAGGAAAAAATGCCACGAGAAATACACGCATAATTCGAGCGCTCGGTACACGACAGTGTGTCCTCACTGCGATAAAACGTTCAATAGCTATTATCAGCGAAATAGGCATATGTTTGACGAGCATAACATATCGGCAGCGACCTATAAGTGTAATATTTGCGATAAGTCTTTCATTTTGAAGTCGAAACTTACGTCGCATATAAAAAAGGTTCACTTGATGGAGAGGAATCATATATGCCCGGATTGTGGACAGGGTTTCTTCATCAAGCAGTCGTTAGATGAGCATATGATTAGGCATAATGGGGAGAGGGTGTTCAATTGCACGGTATGCCATAAGTCATATGCGAGGAAGAAGACGTTGAGAGAGCATATGCGGATACACAATAATGATAGGCGGTTCAAATGCGGTTTATGTGGTCTGGCCTTTGTCCAGAAATGTAGTATGAAAAGTCATATGCTGTCGAATCATGGGATTTCTTTGACGGAGTTTGAGAATGTTGCTAAGGCTATTAATTCGAAATGCGATCAGTGA
Protein Sequence: MDSSSLCRCCLARPPDKELETLYTCLGKKEIYADMLKDCFEIHLSIEPSARDNGICELCVTRLRDAYDFKHQVVRCQNEFQLKLSSDVNEDEMLKVKEEMSEDGDRDVFFFDMNNDVIPAIDTEQKLAEILGLKDVTIKRKKKHKKHIDDDDDHDNLPLKILRKMKKDDPSLPDNAKHVYNVKKILKYSNCTPFFSKTLSGIVCASCKTTCPNLIELRSHIKEKHPKIHLGDKRLDKSNLALKMDITDLKCKICSKNVHNITNLKKHLFTEHNEKFFPDIYDYIFEFKITDGDILNCALCNSTFETFKMLLQHMNGHYRNYICEVCDMGFINKHRLNNHKRTHDVGSFKCSFCDKVFSTKVRKKCHEKYTHNSSARYTTVCPHCDKTFNSYYQRNRHMFDEHNISAATYKCNICDKSFILKSKLTSHIKKVHLMERNHICPDCGQGFFIKQSLDEHMIRHNGERVFNCTVCHKSYARKKTLREHMRIHNNDRRFKCGLCGLAFVQKCSMKSHMLSNHGISLTEFENVAKAINSKCDQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -