Acar004643.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989978.1:330747-333525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.5e-06 0.00053 20.6 0.3 2 23 68 90 67 90 0.95 2 11 0.00062 0.061 14.2 1.9 2 23 98 120 97 120 0.92 3 11 0.0024 0.23 12.4 0.3 2 23 127 149 126 149 0.92 4 11 0.00074 0.072 13.9 1.9 2 23 156 178 155 178 0.95 5 11 1.2e-05 0.0011 19.6 1.2 2 23 185 207 184 207 0.95 6 11 0.083 8.1 7.5 1.1 6 23 218 236 214 236 0.93 7 11 0.47 46 5.1 1.8 2 23 242 264 242 264 0.95 8 11 0.00022 0.021 15.6 1.1 2 23 293 315 292 315 0.97 9 11 0.00029 0.028 15.2 1.0 2 23 323 345 322 345 0.91 10 11 2.3e-06 0.00022 21.9 1.4 2 23 351 372 350 372 0.97 11 11 0.0009 0.088 13.7 4.0 2 23 379 401 378 401 0.97
Sequence Information
- Coding Sequence
- ATGGAGAATTTAGTGGAAATAACAATAGACCCACTTATTAGAAGTGTAGAAATTAAAGTAGAACCTTATGAAGAAGAAAATTCAACTAACAACGCTTTGGAATCGACCGAGAATCATGAAAGATCGGAAGAAAACATTGATAATCGTAGGAAAACTGATGTGGTGGATAAAGTGTACGCTAACGGTAAGAAAAACCGTCTTCCTTGTCCGAAATGCGATCGTACCTTAAAAAACCGTGCCAATCTCAAACAACATTTAGATACTGTTCATTTAGAGGAATCAGAAAATGTGGAATGCGCTCAGTGTCATCGAACTTATAAATCCAAACAGTATTTATGGAACCACATACATGCTGTACATCGCGAAATAGCAGAGGTCCCCTGCCCTGTATGTAAAAAGATTTTTATGAACAAGCGACGTTTAGATAATCATATATACTACACACACAAAGACACAACGCCTATACCTTGTACTAAATGCGAGAAGGTGTGCAATGGTCAGCGCAAGCTAAAATTACACATGAAAAATGTCCACACATTCGAAGATAACATTAAATGTCCTCAGTGCAATAAATCATTTAAAATAGAGACGCTTCTAAAGAAACATATGAGTTACAGCCATCCAAAGGATGATATTGAATATAAATGTCCGTGTGATAGAACATTTAATTCGGACCTAAAATACAAAAAGCATATGAATAATGTTCACTCGGTAAACAGACCGAGATGTCTTCTTTGTTACAAAGCCTATAAAACCCCGCAAATTGCAAAAAAGCACCTCAGGGTTTGTCATAATTTGAAAGAGAAACTTGATAGTTATATAACATTCAAAGATTTTCCAGAAATTTCAATAAAAGTAGAAGAACCAGAGAAAATTACTTGCGAGTTATGTTTTAAGATGTTCACTGATAACATCATCTTTCAACGGCATATGAGAACAACTCATCCACCCAAAGAAGCTGAACAATCATGTGATATTTGTAATAAAACATATAAATCGGCCCTACATCTTCGAATACACAAGTCGGCTGTGCATTCGGATAAAGGAATCACTTGTGATGAGTGCGATAGGATGTTTTCATCAAAAAAGTATTTATTGAGGCATAAATTGACTCATGCAGATGGATTTAAGGTACAATGTACTATGTGTGAGAGGTTCTATAAGTCAGATACACATTTAAAGAGGCATTTTCGAAGGGTACATGATACTATTTGTGGTATCTAA
- Protein Sequence
- MENLVEITIDPLIRSVEIKVEPYEEENSTNNALESTENHERSEENIDNRRKTDVVDKVYANGKKNRLPCPKCDRTLKNRANLKQHLDTVHLEESENVECAQCHRTYKSKQYLWNHIHAVHREIAEVPCPVCKKIFMNKRRLDNHIYYTHKDTTPIPCTKCEKVCNGQRKLKLHMKNVHTFEDNIKCPQCNKSFKIETLLKKHMSYSHPKDDIEYKCPCDRTFNSDLKYKKHMNNVHSVNRPRCLLCYKAYKTPQIAKKHLRVCHNLKEKLDSYITFKDFPEISIKVEEPEKITCELCFKMFTDNIIFQRHMRTTHPPKEAEQSCDICNKTYKSALHLRIHKSAVHSDKGITCDECDRMFSSKKYLLRHKLTHADGFKVQCTMCERFYKSDTHLKRHFRRVHDTICGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -