Basic Information

Insect: Anthocharis cardamines
Gene Symbol: prg
Assembly: GCA_905404175.1
Location: FR989953.1:7687635-7689856[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.24 24 6.0 1.5 2 23 172 194 171 194 0.84

2 10 0.19 18 6.4 0.1 1 23 200 223 200 223 0.94

3 10 1.8e-06 0.00018 22.1 1.4 1 23 229 251 229 251 0.96

4 10 9.2e-07 8.9e-05 23.1 3.0 1 23 257 279 257 279 0.99

5 10 4.7e-05 0.0046 17.7 0.1 1 23 285 307 285 307 0.97

6 10 0.00011 0.011 16.6 0.6 1 23 313 335 313 335 0.97

7 10 7e-05 0.0068 17.2 1.5 2 23 423 445 422 445 0.95

8 10 0.0016 0.16 12.9 1.3 1 23 451 473 451 473 0.97

9 10 3e-05 0.0029 18.3 2.1 1 23 479 501 479 501 0.98

10 10 0.001 0.1 13.5 0.0 3 23 510 530 508 530 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.24	24	6.0	1.5	2	23	172	194	171	194	0.84
2	10	0.19	18	6.4	0.1	1	23	200	223	200	223	0.94
3	10	1.8e-06	0.00018	22.1	1.4	1	23	229	251	229	251	0.96
4	10	9.2e-07	8.9e-05	23.1	3.0	1	23	257	279	257	279	0.99
5	10	4.7e-05	0.0046	17.7	0.1	1	23	285	307	285	307	0.97
6	10	0.00011	0.011	16.6	0.6	1	23	313	335	313	335	0.97
7	10	7e-05	0.0068	17.2	1.5	2	23	423	445	422	445	0.95
8	10	0.0016	0.16	12.9	1.3	1	23	451	473	451	473	0.97
9	10	3e-05	0.0029	18.3	2.1	1	23	479	501	479	501	0.98
10	10	0.001	0.1	13.5	0.0	3	23	510	530	508	530	0.92

Sequence Information

Coding Sequence: ATGGATGATTCTTATATTATTGCTAATTTCCATGATTTGTGCCGATTATGCTTGTGTAAAAGTGCATTCACTATTTCGATTTTTTGTAATATCCCTGATGATGAAGAAAGTGGATTACTAACCTCAAAGATAGCTGAATGTTTCGAACTGCAGTTGGACCCAAATGATGGCCTTCCCACAAGAATTTGCTATAAATGTTTCTATAAAGTAAATAAGTGCTCCAAATTCAGATCTTTGTGTATTGAAAGTGAAGCCAGATTAAGACAAATAACAAATCATGTGAATGAACTAGATACTTCTAACTCGTCTGAATTTAACTATGTTAACACAGAACAGAAGCCAAAGATAGAGAATTACATTGTAGAGGATAGTGTTGTGATGGTAGTAGATCCTAGTCTTGACTATGATTCTTCGGAGGACTCAGAGAATGTTGAACAAGGAGAGGCTGACACTGCTGAACAAGACAACACCCCTGATGTTGAACCTGCCCTGAGTTATTTTAAAAATGTATCTATGTGTCAGTATTGTGATCAGGCTTTTATTTCACAAGAAAAATGCATGGAACATGAACAGAACTTTCATGATCCTAACCTACCATATAAATGTATAGAGTGCAGTATAGTTTTTGCTGAAAGAAATTTATTTATTAGCCATACCAAAGCCGTACATGGCAGTGATAAGCCATATCATTGTCCAGAGTGTGAGAAGAGCTTTGGTCGTCGTTCTGATTTGAGAAAACATTCAATTGTTCATACTGGCATTAGACCATATCAATGTCAATTTTGTTTAAAAAGTTTCTCTCGTAACACAAATTTGAGCAAGCATTTGAGAATTCATGCAGGCCATAAGCCTCATGTTTGTCCCATGTGTCCCCGTAGTTTTGTAGCAAAAGGAGACCTAGATAGACATGTTCAAATTCATTCTGGAACGAAGCCATATGCATGCCAAAAATGTCCTTTAACATTTGGTAGAAAAGACAAATTGGTAAAGCATGAGCTCAGACATGGACAATCATCATCACTTCATGGAAATGAACAAGAAAATAATATGGTTGTCAGTGTAAATCCCTTCAGTAATTTGATGTCTCCACCAACTGAAATGCCAAATTCAAATGAATATGATCTCCCTAGAGTTCCGGATCATATAGCTGGGGAAAGCAGTTTTATAAATCACATACAAAAGGGCCCTTCAACATCCAGCAAACAAGTGCATAGTTCACCAAAACAGAAATCTCCTGTCATGAGTAAGAATAAACCTAAAAACATCAAATGTCACCAGTGTCCTAAGAGATTCTCCTCCCTTGATGCATACAAAACTCATGTATCTATATCTCACATTGGATCAAGAGTATTTCAATGTAAAGTTTGCTTCAATAAATTTGTCAGTAAAAAAGAACTTGATCGACATGCTACTGTCCATGCTGCTGGAAAATTATTTAATTGTAGTCAGTGTGATGAACAATTTTCAAGAAAAGACAAACTGGATAAACATGAAAAAACCCATGAATGTTTAGTTGTGAATATGCCTTGTATAGAGTGTGGAGCAACATTTGAAAAGAAGGCAGATTTAGTTGCACATATAAAATCTCATTTTACTGATAATTTTGATTATAAAATGCCTGAAACTGAAATTAAAAAAGAGAATGAACAGGATTTAACTATGGACACCAATTATTATGATCTTGAGACCTGA
Protein Sequence: MDDSYIIANFHDLCRLCLCKSAFTISIFCNIPDDEESGLLTSKIAECFELQLDPNDGLPTRICYKCFYKVNKCSKFRSLCIESEARLRQITNHVNELDTSNSSEFNYVNTEQKPKIENYIVEDSVVMVVDPSLDYDSSEDSENVEQGEADTAEQDNTPDVEPALSYFKNVSMCQYCDQAFISQEKCMEHEQNFHDPNLPYKCIECSIVFAERNLFISHTKAVHGSDKPYHCPECEKSFGRRSDLRKHSIVHTGIRPYQCQFCLKSFSRNTNLSKHLRIHAGHKPHVCPMCPRSFVAKGDLDRHVQIHSGTKPYACQKCPLTFGRKDKLVKHELRHGQSSSLHGNEQENNMVVSVNPFSNLMSPPTEMPNSNEYDLPRVPDHIAGESSFINHIQKGPSTSSKQVHSSPKQKSPVMSKNKPKNIKCHQCPKRFSSLDAYKTHVSISHIGSRVFQCKVCFNKFVSKKELDRHATVHAAGKLFNCSQCDEQFSRKDKLDKHEKTHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDYKMPETEIKKENEQDLTMDTNYYDLET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00771261;
90% Identity: -
80% Identity: -