Acar018424.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989967.1:1639528-1657650[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.2 1.1e+02 3.9 1.9 1 23 315 337 315 337 0.95 2 12 0.0025 0.24 12.3 0.5 3 23 346 366 344 366 0.96 3 12 0.049 4.8 8.2 0.8 1 23 370 392 370 392 0.94 4 12 8e-05 0.0078 17.0 1.9 1 23 397 420 397 420 0.98 5 12 0.011 1 10.3 1.4 1 23 424 447 424 447 0.93 6 12 0.024 2.3 9.2 0.1 3 22 464 483 462 487 0.92 7 12 0.0023 0.23 12.4 0.0 1 23 494 517 494 517 0.94 8 12 0.82 80 4.4 2.9 2 23 537 559 536 559 0.95 9 12 0.00026 0.026 15.3 1.3 1 23 570 592 570 592 0.95 10 12 4.3e-06 0.00041 21.0 0.2 1 23 598 621 598 621 0.97 11 12 3.9e-06 0.00038 21.1 0.1 1 23 627 649 627 649 0.98 12 12 5.9e-06 0.00057 20.5 0.9 1 23 655 678 655 678 0.98
Sequence Information
- Coding Sequence
- ATGGATATCCTGAAAGTTTGTAGAGTTTGCCTTGGAATGGATATAACTTTATACAGTTTCCATTCAAACTCTTTGGAACACTACTATCAACTGCTAACAGGAGCTAACCCACTGCACCAACTGACGCAACCAATGTTCGCTTGCTATGAATGTGCAGCATTGTTGAGAAAATTCTTCTTGTTTCGACAAAAAAGCTTACGAGCTCAGGCAGTGTTACAGGGGATTGTACAGAGAAGTGGACAGATAACAGAGGAAGATGTGAAAGAAGTTAAACAATACTTTGTTCTAAGCACAAGTCTGAAGTTAGCTCTGAATGTAACTGATATAAATATTTATCCAGGAACTGACGGCCATGACTCAAAAAATAAAATAAAACTAAAGCCAACAATAATTGTAGGGAGAAAGAAATATATTATAAACAGAAATCTAACAGAAGAATCTACTGTTGATGATTCTACTAATTCAACCATAAACTCAGAGATCAATCCAACAATTGTTGCAAGTTGTTCAGACATAAACCAATATCCTCCCAGTCCATCGCAGCACCAAAAAGTTTCTGTCAGTACACAGATAGAGGAAGAGGTTGCCAGTCCAGTAGTAGATGATGACACATTGCATGAAATGGATGATCTCAATGATAAGAAAACTGAGGCGGTTTGTGATAAGAAATTAAACAGAAATAAGTTGCCCAACGACTGTGAGAAAATGGGAGATTGTGCAGCATTTGTAAATGTGGAAAAGAAGACTAAAGCTAAGAATGCAAGTAAGGCGCGGGGAAGAGAGCCAAAAGTGAAGAGTTGTGATTCATCTGTCAATATGGTAAAAACTTTTCGCAAGGACACGGATTTGGAGGAGTTTGTTCGTATTATTCATTTGACGAAAGAAGAACAGTTGGAGAAGATAAGACTGCGGCAGAAGTCCATAGAGTATGTTAACGCCACATACAAATGTGATAAGTGTTTCTTGTGGTTCACCGACAAACGCGCTCAGGACAAACATTCCCGGCTGCACGATGAGTCTCGCGGCAGCCTGGCGTGCGACGTCTGCCGGATCCGCTTCCGGACCCTGCTGCAGCTCAAGCTGCACTACTCCACGCACCCGAAGCGGTACATCTGCAGGAGTTGCCCTCGGGTTTTCAACACCTTTTACCAAGCTAGACTACACGTCCTGTTCCACCAAGGACTCCGCTACAAGTGTCCTCACTGCGACGAAGTTTACTCGAGCAGAGGTGCGTATCTGCTTCACTTCCGGAGAAAGCACCCGGGGGGCTTCACTTGTTGCTTCTGCGGCAATTCGTTCGGCTCGCAGGCCGGCCTCAACATGCATAAGTCTCTGGTGCACAAGGATGACGATGAGAGTGAAATATCTAGCAGCTCGGGCCGGCTGGCCTGCAAGCAGTGCGGCGTGAGATTCGCGGCGCTCGGCGCGTACCGGCGGCACCTGCTCACTGCCAGCCAGCACTACGAAGGCAACGATAAGTTCGTCTGTGTCGAGTGTGGTGAGAGATTCCCGACGCGAGCGAAGATGGCCGAGCACGGGCGGGCGGCGCACCGGCGGCCGAAGCGCTGGAGGCGGGCGGGCGTGCCGAAGGCGGAGCGCTGGCCTATCGAGTGCCCGCATTGTTCTGAGGAGATAAAGAGTTCGATGGAGAACAGGCTGCACTACAAGCGATGTCATCCAGACAAGAAATACCCTGTTAAGAAGAAACACATCTGCGAAGTGTGCGGGAAGACTTTTGTGTCGAAGACGGTGCTCAGCTACCACCTGAACTTCCACACGCGCACCACGCCGTTCGAGTGCGGCGAGTGCGGGAAGGCCTTCCACTACCGCGGCGGGCTCACCGCGCACCTGCGAGTCGTGCACTCGCACACGCGCCCGTTCGTGTGCGCCGACTGCGGCCGCGCGTTCAAGGCCAAGGGCACACTCGCCAAGCATATAAAGATACACACAGGTGAGAGGCCATATAAATGTGACGTTTGCGAAAAGGCGTTCGCTTTCAATACAACCCTCAAGCTGCACTACCGCACAGTGCACCTCAAACTGCCCGACCCGTACAAAATGTCCCGCAGGCAGCGGAAACTTGCTAAGGCGTTGCAAGAGCAATAG
- Protein Sequence
- MDILKVCRVCLGMDITLYSFHSNSLEHYYQLLTGANPLHQLTQPMFACYECAALLRKFFLFRQKSLRAQAVLQGIVQRSGQITEEDVKEVKQYFVLSTSLKLALNVTDINIYPGTDGHDSKNKIKLKPTIIVGRKKYIINRNLTEESTVDDSTNSTINSEINPTIVASCSDINQYPPSPSQHQKVSVSTQIEEEVASPVVDDDTLHEMDDLNDKKTEAVCDKKLNRNKLPNDCEKMGDCAAFVNVEKKTKAKNASKARGREPKVKSCDSSVNMVKTFRKDTDLEEFVRIIHLTKEEQLEKIRLRQKSIEYVNATYKCDKCFLWFTDKRAQDKHSRLHDESRGSLACDVCRIRFRTLLQLKLHYSTHPKRYICRSCPRVFNTFYQARLHVLFHQGLRYKCPHCDEVYSSRGAYLLHFRRKHPGGFTCCFCGNSFGSQAGLNMHKSLVHKDDDESEISSSSGRLACKQCGVRFAALGAYRRHLLTASQHYEGNDKFVCVECGERFPTRAKMAEHGRAAHRRPKRWRRAGVPKAERWPIECPHCSEEIKSSMENRLHYKRCHPDKKYPVKKKHICEVCGKTFVSKTVLSYHLNFHTRTTPFECGECGKAFHYRGGLTAHLRVVHSHTRPFVCADCGRAFKAKGTLAKHIKIHTGERPYKCDVCEKAFAFNTTLKLHYRTVHLKLPDPYKMSRRQRKLAKALQEQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -