Basic Information

Insect: Anthocharis cardamines
Gene Symbol: -
Assembly: GCA_905404175.1
Location: FR989973.1:5333213-5336654[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.056 5.4 8.0 0.6 5 23 352 370 351 370 0.96

2 11 0.039 3.8 8.5 0.3 3 23 378 398 376 398 0.90

3 11 2.6 2.5e+02 2.8 0.4 3 23 407 427 405 427 0.85

4 11 6.8e-08 6.6e-06 26.6 0.9 2 23 432 453 432 453 0.98

5 11 0.00012 0.012 16.4 2.3 1 23 459 481 459 481 0.98

6 11 0.00068 0.066 14.0 0.2 2 20 486 504 486 506 0.93

7 11 0.00047 0.046 14.5 0.2 1 23 539 562 539 562 0.96

8 11 5.5e-05 0.0054 17.5 0.3 1 23 579 601 579 601 0.98

9 11 5e-05 0.0049 17.6 4.5 1 23 607 629 607 629 0.98

10 11 0.0019 0.18 12.7 0.3 3 23 637 657 635 657 0.98

11 11 1.1e-05 0.001 19.7 0.8 1 23 663 686 663 686 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.056	5.4	8.0	0.6	5	23	352	370	351	370	0.96
2	11	0.039	3.8	8.5	0.3	3	23	378	398	376	398	0.90
3	11	2.6	2.5e+02	2.8	0.4	3	23	407	427	405	427	0.85
4	11	6.8e-08	6.6e-06	26.6	0.9	2	23	432	453	432	453	0.98
5	11	0.00012	0.012	16.4	2.3	1	23	459	481	459	481	0.98
6	11	0.00068	0.066	14.0	0.2	2	20	486	504	486	506	0.93
7	11	0.00047	0.046	14.5	0.2	1	23	539	562	539	562	0.96
8	11	5.5e-05	0.0054	17.5	0.3	1	23	579	601	579	601	0.98
9	11	5e-05	0.0049	17.6	4.5	1	23	607	629	607	629	0.98
10	11	0.0019	0.18	12.7	0.3	3	23	637	657	635	657	0.98
11	11	1.1e-05	0.001	19.7	0.8	1	23	663	686	663	686	0.96

Sequence Information

Coding Sequence: ATGTATTCTAAAATGGAATCGTGGTCGAATGTGTGCCGTTGCTGTCTCACCCCGGACGCAACAGTGTCAATTTTAGACAGCGCCGAAAATATAAAGCAAAAATTATTGGAAACTACTGCGATTGAGGTAAAAGCAGATGACAGACTGCCACAAAGACTATGTATTGATTGTTTGGCAGTATTAAACACTGCACACCACTTTCAAGCTCAGTTTCAAAAGATGGATAAAGAATTAAGGGCTCAACTCAACTCATTACTGTCAGAGGTAAAAGTTGAAGAAGAAGCCTTACCTCAAAATGATAAAAAATTCAAAGACAATGATGATGTTACCAATGAATGTATGAGACAAATAGAATCCATGATCAAATTAGAACCTATGGATGATGATGATTGCTATTATGTCTTAGTGATTGATGATAAAGATGAAGATAATAAAAAACCACCATCACCACCTCCATTAGTAAAAGAAGAAGTCTTTGAAGTTAATGATAATTCTATTCAGCCTATTGAAAGCACAAACACACAAAATACGGACACAAATGAATTTATTATGCAGAATGATGCAATGGAAAGTTGTGTTGATTCATTCTTACTAACAAACACCAGAGTGCCTGCTAGTGTCCCAGCTACTATTCTAGAAAATGAGGAAGGCCATGAAACTGAAATTGGTTTTGTTCAAGATATGAAAAATAATGCTGAAAGTGATAATACTATGACTGTCTACAATTCGTCTGTTGTAAATAAACCAATAACAGTCACACTATCTGATAGTGTGAAAGAATTTAATCCCAAAAACCTCATTAAAATTGTCACCCCATCAGGGGTTGAAAAAACAATTTTACTGCAGAATGAGGATGGTATTAACTACTTGGCAGAAAATCAAGAGGAGTCGAATGACAATGATGACAATCAAGAAGAAATTATATTCTGTGAGGGTGATGATAATTCACAGTTTCAGATACTTAAAGTTGATGGATCTGAATTTGTTATTGAATATGCAGATGAAGGCCAAATAGCAACTGTTCTTCAACAAGAGGATGGGACATTCCTATGTGACTGCGGAGAGCAGTTTGAAGATTTACAAAAATTTGAGAAACACCAATATAAACATAATCCAGCTGGTGAACATTTGTGCAACTTGTGCGGCAAAGGATTTGAAACTGCTGAGATTTTAACTGGCCATACTTTACTACATAGATCAACAGGACCCTTAGTCTCTTGTCCATTCTGCAGTCAGCTAATTAGACGCAACGCCCTAACACAACATATAAAATACACACACAACTTGAAACCTAAATGTGAAATTTGCGAAAAGACATTTGCCAACCAGAATAACTTGAAACGACACATGATGATACACAGTGGCTTAAAAGAATTCGAATGCGATATTTGCTTCAAACGGTTCAACCAAAAGATTACAATGCAAACGCATAGATTAACTCACATCAACTCGAACACCTGCAACTACTGCAATACAGTTTTTGAAAACAAAGCCACTTTAGCACAACATAAAGAGTCGAGTGAATGTTCTAAATCTAAAATTAATAGCGTCAAAGAAGAATTGATAAAGACAGTACGTCAGACTGTGACCACAAACTTGGGAAAGCTTTTGGGATATGCATGTTCTTTATGTAAAAAGATGTTTTCTCTTGAATCAGCGTTAGATCAGCATATTGAAAGCATGCATATAGTTGATGAGATGGAGGATAAAAAGATTAATAAGCAACTTAAACGTTTCGAATGCAGTATATGTGGGAAACAATGTGCTAGTCAAGCTATGCTAGTGATGCATGAACGGGTGCATACGAACGAAAGGCCATTCCCTTGCCAACTATGCTCTTTACGGTTCAAAACTAAAACGCATTTACGGACCCATCAATTAACTCATACAAGAGAAAAGAAGTTTGGTTGTTCAGTCTGCATGAAATTCTTTGCCCTCAAAGGGAATTTAGTAGTGCATTTACGCACTCATACGGGAGAACGGCCCTATGTGTGTACGTTATGTGGGGAAGCGTTCATTGATTCGAAATACTTGAAGAAGCATAAGTTAAGAAAACATGCAATTGATAATGTGCCTTGGAATAAATATTAA
Protein Sequence: MYSKMESWSNVCRCCLTPDATVSILDSAENIKQKLLETTAIEVKADDRLPQRLCIDCLAVLNTAHHFQAQFQKMDKELRAQLNSLLSEVKVEEEALPQNDKKFKDNDDVTNECMRQIESMIKLEPMDDDDCYYVLVIDDKDEDNKKPPSPPPLVKEEVFEVNDNSIQPIESTNTQNTDTNEFIMQNDAMESCVDSFLLTNTRVPASVPATILENEEGHETEIGFVQDMKNNAESDNTMTVYNSSVVNKPITVTLSDSVKEFNPKNLIKIVTPSGVEKTILLQNEDGINYLAENQEESNDNDDNQEEIIFCEGDDNSQFQILKVDGSEFVIEYADEGQIATVLQQEDGTFLCDCGEQFEDLQKFEKHQYKHNPAGEHLCNLCGKGFETAEILTGHTLLHRSTGPLVSCPFCSQLIRRNALTQHIKYTHNLKPKCEICEKTFANQNNLKRHMMIHSGLKEFECDICFKRFNQKITMQTHRLTHINSNTCNYCNTVFENKATLAQHKESSECSKSKINSVKEELIKTVRQTVTTNLGKLLGYACSLCKKMFSLESALDQHIESMHIVDEMEDKKINKQLKRFECSICGKQCASQAMLVMHERVHTNERPFPCQLCSLRFKTKTHLRTHQLTHTREKKFGCSVCMKFFALKGNLVVHLRTHTGERPYVCTLCGEAFIDSKYLKKHKLRKHAIDNVPWNKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -