Acar006420.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989976.1:4974276-4980736[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.11 11 7.1 2.9 2 23 16 38 15 38 0.94 2 24 0.059 5.7 8.0 0.8 2 23 49 71 49 71 0.96 3 24 0.0025 0.24 12.3 1.0 1 23 77 99 77 99 0.98 4 24 1.2e-05 0.0011 19.6 1.5 1 23 105 127 105 127 0.99 5 24 0.024 2.3 9.2 1.8 1 16 133 148 133 150 0.88 6 24 0.17 16 6.5 0.6 1 23 201 223 201 223 0.94 7 24 0.15 14 6.7 0.1 2 23 256 278 255 278 0.94 8 24 0.00053 0.051 14.4 1.9 2 23 301 322 300 322 0.97 9 24 0.15 15 6.6 5.7 1 23 326 348 326 348 0.98 10 24 1.1 1.1e+02 4.0 0.5 1 12 353 364 353 367 0.86 11 24 0.016 1.6 9.7 1.0 2 23 384 406 383 406 0.94 12 24 0.00045 0.044 14.6 0.7 2 23 417 439 417 439 0.97 13 24 0.61 60 4.8 4.5 1 23 445 467 445 467 0.96 14 24 6.7e-07 6.6e-05 23.5 1.4 1 23 473 495 473 495 0.98 15 24 0.0041 0.4 11.6 3.0 1 23 559 582 559 583 0.93 16 24 0.82 80 4.4 0.1 2 23 618 640 617 640 0.91 17 24 0.03 2.9 8.9 3.3 3 23 664 684 663 684 0.97 18 24 0.0015 0.14 13.0 0.3 1 23 688 711 688 711 0.97 19 24 0.023 2.2 9.2 3.9 1 23 716 739 716 739 0.94 20 24 0.18 17 6.4 1.0 2 23 747 769 746 769 0.93 21 24 0.048 4.7 8.2 0.4 2 23 780 802 779 802 0.96 22 24 0.0012 0.12 13.3 2.6 1 23 808 830 808 830 0.96 23 24 1.2e-05 0.0011 19.6 0.6 1 23 836 858 836 858 0.99 24 24 0.0012 0.12 13.3 4.9 1 23 864 887 864 887 0.97
Sequence Information
- Coding Sequence
- ATGTGTCATGAGACTAGCGCGCACACTAACGTGAATCAGATGAGCAAATGCGGCTACTGTAGTGAAAAATTTAGCTCTCACAAAAGGAAGGAGAGGCATTTGAACGAAGCTCATGGGATACCGTTACCCAAGATTGAGAAAGCGACTTGCAAGAGTTGCTTGCGCGAGTTTCTAAATAAGAATGCACTAAACGCACATTTGAGACGCGTGCACTTACGGGAGAAAATGCATCGATGTGAAATATGCGACATGGAATTCTTTGCCCTGAATGAATTGAAGAATCACTTGCTTAAGCATACTGGGGAGAAGTATTTCAAGTGTAATGTCTGTTTGAAGTCGTATGGACGGAGAACTACTTTACGCGAGCACATGCGAATACATGAAAACGATAGGCGTTTTAAATGCGATCATTGTGGACAGGCGTTCGTTCAGAAATGTAGCTGGCGTCAAATTGATTGGAGCATAGACACCTCTGGAAGTGAACGCGTATCAAGGAAATATGGGCCTAGAAGTGATCTTTTCAAAAATCTGAAACATAACGTCAAACTTATACTGACGTGTACAAACGCGAGTCCGATTCGATGTAGAGGTGGCATCGGATACGCCTGTTGCTTCTGCAAGGAACAGTTCCCAGCCGCAGCAGAACTTAAGCAACATTCGCTAGAACATTACGAATTCCTGGATACTTTTAGCAATAAGTTCTTGAGCAACATTCTATCCAAAGCCGAACATAACCTCTGCATAAAACTGGACATAACATCGCTTCACTGTACCCTCTGTGGAATAGCAATAAACTCTTTGGGTGAACTATACACTCATTTAGAAATAGAACACGACAAAGTCATATTCAGAGACATGAAGGATTATATTGTTCCATTTAAATTGGATGAAGATTCTCTGAGCTGTTGCATATGCTCAAAAGGATTTAACTCTTTCAAGGCGCTGTTAGAACACATGAACACGCATAGCACCAATTTCAAATGCTGTATTTGTTGTGCGACTTTTATCAATAAATCAAAATTGTCGACGCACGAATTGACGCACGTGATAAGCGAATTCAAATGTCGTTACTGTCCTAAAGTATTAGATACGAAATTGAAACAAATGTGTCACGAGCACAGTGTTCACGCAAACCGTCATAAAATCAGCAAATGCGGATATTGTGGCGAGAAATTTGCAAGTTATCATCGGAAGGAGGAACATATGCAAGAGGCTCATGGAGTGCCGATGAAGAAGAAGGAGAAAGGGACATGCAAGATCTGCATGCGTGAATTTATGAATAAGAACGCGTTGAATGCTCACATGAGACGCATACATCTATTGGAGAAAACGCATAAGTGTGAATTTTGCGATATGGAGTTCTTCAGTCATAACGATCGGAAGAATCACGAATTGGTTCATACAGATGTTAAGGCTTTTGAGTGTCAACTGTGCTCCAAGACGTTTAAGCGAAAGAAAGCACTTATAATTCATATGCGATTACATGAAAGGCAGAAATGTGAACATTGCGGTATTAAAGAAGAATCTGGCGAAGACACAGAGCAAGAGACAGAACCTAACTCTGAGAAGAGAGAAACTGATATAGAACGTGTAATTCTTCAAACTAGAAATAATATCAAAGAGATTTTGATATGCACTAATGCAACTCCGATACGAAGTAAAATTGGACTTGACTATGCATGTTGCTTTTGTCCAGAGCGTTTTACGGATCCTGCCGAGTTAAAGCAACACTCGTGTAATGAACATTTTAAGAATTTGGATAAAATGGACCCCAGAGTTGCTGAACGTACCCTGAGGAAATTAATTATAAGGAAAAGTCGACTTACCGTTAAATTGGATATAACGTCACTTACCTGCAAATTATGCGACGCTCCTATTAATGATATCGAAGAACTTTTTCAGCATTTAACAGAAACCCACAAACGTATGGTGCATACAAATATAAAGAATCATATTGTTCCTTTCAAATTTGAATCAGAACAACCCAGTTGCTGTATTTGTTTTAAAGAGTTCACATCTTTTAAAAGTGTTGTTGAACATATGAACAAGCATACTACTAACTACACGTGCGAGATATGTTCCGCTACTTTTATAGCCCTAGACAGACTTAAGTCGCACATGAAGTTGAACCATGCGTTTGGTAAATTTAAATGTAACTTCTGCCCAAAATTTTTCAATACAAAACTAAAAGTTTATCACCACGAAAGAGGCGTGCATAAGAAAGCGGACAAAATAAACAAATGCGAGTTTTGCGTTGAAGTATTTGCAACTCGCTGGGAAAAACAAAAGCATAAGTTTAAAGTTCACGGAATAAAATTGCCGATTTTTAAAAAGGTCACATGCGAGAGTTGCTCCCGTGAATTTCCTAATATTGGTGCTTATAACACGCATTTTAGACGATTCCACTTGATGGAAAGAAGTCATAAGTGCGAATACTGCGAAATGAGATTCTTCGATTTGAGAGAGCTACAAAAACACGTAGTAAAGCATACTGGAGAGAAGAATTACCGATGTGACGTGTGTTTGAAGGCGTTTGGGCGGCAGAAAACTCTTCGAGAACACTTACGCATCCATGCTGACGATAGGCGATTTAAGTGCGAGCATTGTGAGCAGTCTTTCGTGCAGAAGTGTACTTGGAAAGGGCATATGCGTGCGAAGCATGGGAAAAATGTTTAA
- Protein Sequence
- MCHETSAHTNVNQMSKCGYCSEKFSSHKRKERHLNEAHGIPLPKIEKATCKSCLREFLNKNALNAHLRRVHLREKMHRCEICDMEFFALNELKNHLLKHTGEKYFKCNVCLKSYGRRTTLREHMRIHENDRRFKCDHCGQAFVQKCSWRQIDWSIDTSGSERVSRKYGPRSDLFKNLKHNVKLILTCTNASPIRCRGGIGYACCFCKEQFPAAAELKQHSLEHYEFLDTFSNKFLSNILSKAEHNLCIKLDITSLHCTLCGIAINSLGELYTHLEIEHDKVIFRDMKDYIVPFKLDEDSLSCCICSKGFNSFKALLEHMNTHSTNFKCCICCATFINKSKLSTHELTHVISEFKCRYCPKVLDTKLKQMCHEHSVHANRHKISKCGYCGEKFASYHRKEEHMQEAHGVPMKKKEKGTCKICMREFMNKNALNAHMRRIHLLEKTHKCEFCDMEFFSHNDRKNHELVHTDVKAFECQLCSKTFKRKKALIIHMRLHERQKCEHCGIKEESGEDTEQETEPNSEKRETDIERVILQTRNNIKEILICTNATPIRSKIGLDYACCFCPERFTDPAELKQHSCNEHFKNLDKMDPRVAERTLRKLIIRKSRLTVKLDITSLTCKLCDAPINDIEELFQHLTETHKRMVHTNIKNHIVPFKFESEQPSCCICFKEFTSFKSVVEHMNKHTTNYTCEICSATFIALDRLKSHMKLNHAFGKFKCNFCPKFFNTKLKVYHHERGVHKKADKINKCEFCVEVFATRWEKQKHKFKVHGIKLPIFKKVTCESCSREFPNIGAYNTHFRRFHLMERSHKCEYCEMRFFDLRELQKHVVKHTGEKNYRCDVCLKAFGRQKTLREHLRIHADDRRFKCEHCEQSFVQKCTWKGHMRAKHGKNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -