Basic Information

Insect: Anthocharis cardamines
Gene Symbol: L
Assembly: GCA_905404175.1
Location: FR989952.1:6288774-6305252[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 1.1e-06 0.00011 22.8 1.7 1 23 162 184 162 184 0.99

2 17 0.49 48 5.1 5.8 1 23 190 212 190 212 0.97

3 17 6.6e-06 0.00064 20.4 4.1 1 23 218 240 218 240 0.99

4 17 2e-05 0.002 18.8 0.1 1 23 246 268 246 268 0.98

5 17 4.5e-05 0.0044 17.8 0.3 2 23 284 306 283 306 0.96

6 17 4.8 4.7e+02 1.9 0.2 9 23 333 348 329 348 0.93

7 17 0.23 23 6.1 0.0 3 23 403 423 402 423 0.97

8 17 0.037 3.6 8.6 0.1 2 23 437 458 436 458 0.91

9 17 0.00056 0.054 14.3 2.8 1 23 466 488 466 489 0.95

10 17 0.021 2.1 9.3 0.1 1 23 494 517 494 517 0.92

11 17 0.00063 0.061 14.2 0.4 1 23 577 601 577 602 0.96

12 17 0.00015 0.015 16.1 0.1 2 23 652 673 651 673 0.96

13 17 0.042 4.1 8.4 0.0 1 23 681 703 681 703 0.98

14 17 3.4 3.4e+02 2.4 0.7 2 23 711 732 710 733 0.91

15 17 0.89 87 4.2 0.2 3 23 809 829 808 829 0.95

16 17 0.0043 0.42 11.5 0.1 1 20 837 856 837 859 0.95

17 17 0.034 3.3 8.7 0.2 1 23 866 888 866 888 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	1.1e-06	0.00011	22.8	1.7	1	23	162	184	162	184	0.99
2	17	0.49	48	5.1	5.8	1	23	190	212	190	212	0.97
3	17	6.6e-06	0.00064	20.4	4.1	1	23	218	240	218	240	0.99
4	17	2e-05	0.002	18.8	0.1	1	23	246	268	246	268	0.98
5	17	4.5e-05	0.0044	17.8	0.3	2	23	284	306	283	306	0.96
6	17	4.8	4.7e+02	1.9	0.2	9	23	333	348	329	348	0.93
7	17	0.23	23	6.1	0.0	3	23	403	423	402	423	0.97
8	17	0.037	3.6	8.6	0.1	2	23	437	458	436	458	0.91
9	17	0.00056	0.054	14.3	2.8	1	23	466	488	466	489	0.95
10	17	0.021	2.1	9.3	0.1	1	23	494	517	494	517	0.92
11	17	0.00063	0.061	14.2	0.4	1	23	577	601	577	602	0.96
12	17	0.00015	0.015	16.1	0.1	2	23	652	673	651	673	0.96
13	17	0.042	4.1	8.4	0.0	1	23	681	703	681	703	0.98
14	17	3.4	3.4e+02	2.4	0.7	2	23	711	732	710	733	0.91
15	17	0.89	87	4.2	0.2	3	23	809	829	808	829	0.95
16	17	0.0043	0.42	11.5	0.1	1	20	837	856	837	859	0.95
17	17	0.034	3.3	8.7	0.2	1	23	866	888	866	888	0.96

Sequence Information

Coding Sequence: ATGTTATTTAAAGGCAATAGCAGTCGATTAGAGCACTTGATAGAGAAAATCCAAGCTAATAAAGAAAATCACGACGTCTCATCGGACGATATAAAAGGGGCAGAGACTGTGATTCGTTACCCGGTCGGAATTTCGATTTTCCTCCCACCCGTTCAATGCCCGAAGTTACCAGACGTGGGGAAGACATGCTTACAGAAAATTATAAACATATCGCACTGGTGGGATTCGAACCCACGACCCATCGATGCGCAAGGCAAGTGTTCTACCGAACGCGCCAACGAAAGTTTACCTAATGGTAATTTATTTTCTATTGATATAATAGAGGCACTGGGCAGCGTTAGTAGCACGGCGGGCAGCTCTTGGCCATCATCCACGCCGGAGCCGTCGCCTTCTCCCGCCTCGACACCAACATCCGCGGACGCCGCAGACCCGGAAGCCGAGGGTGAACCACCCTTCACACTCGGAGCCACGGAACACACGCCCTATCAGTGTCAGTTCTGTGACAAGGCATTCCCCAGGCTGTCCTACTTGAAGAAACATGAACAGACTCATTCGGATCAAATGCCGTTTCGATGCGAATTTTGTTCGAGATTATTCAAACACAAGAGATCTCGTGATCGCCACGTCAAGTTACACACTGGTGATAGAAAATACCGTTGTGCACATTGCGAATCTGCATTCTCACGAAGTGATCACCTCAAGATTCATATGAAAACACACGACAATCAGAAGCCTTTTCAGTGTACTGTATGCAATCGTGGATATAATACGGCTGCGGCGCTGACCTCTCACATGCAGGGACATAAGAGAGACAGAGATGGCCAGGAGGTGGACCGACGGAGAGCGCTGCGCTGTGTCCGCTGCAGGGAGAGCTTCCGACGACCTGAATTACTGCAGGCACATATGACAACGGCCCATGGCGCTATGACTCCACCTCGACGGGTAGCGTCTCAACCGCCACCCACACTCCTCGCGTGCATTTACTGCACTCGCGATACATTCACGAGTATGGAACAATTGCAACTTCATGTACGGGCATCTCATTCAGCTCTAATAAATGGCGAATTATCTGCTACTACCGTAGAGCAACCGGCACCGACCGATCTCAGTCGTCGTGGCTCAGAAGGAACACCTCCGGTTAAGAGACCTCGATCAAGCTCCGGCACAGTAACGCCTCAAACAGTGCTATCACCTAGTACTTTATTATGTAATCAGTGTGATGCCGCGCTACCAGATTTCGAAGCGTTTCGAGCACATTTGAAAGGTCATCTCGAAGAAGGCGCGGACTTATCTCATACTGGCGCCACTCCATGTCTTCACTGTGGAGCTACGTTCACGGACCCAGTGGCATCAGAGCGCCATCTTGCAGCACATTACTTAGCGGTATCTTGCGAGTACACGTGTCACAGTTGCACTCGAAGTTTCCCCGCGCCAGATGATTTACAAAAGCATCTCTTCGAACATCATGCACACAGTTTATATCGTTGCACTCTTTGTAAAGAGATCTTCGAATCTAAAGTTGCTATTCAGGTTCATTTCGCAGTAGCGCACAGCGGCGAAAGTAAAATATGGGTGTGTCGATCATGCGGTTCAAATGGAGGAGCATTGCGATCTGAAGCTGAATGTACCGCCCACGTGCGCAACCGACACGCGGCATCGAGGTGTGCTTGTGGCGCCGTACTGGCGGGAGCACGGGCTCTGAGAGAACATGCAGCAGCACATCACACATATAGATGCCCTGTACCCACTTGCACTGATACATTCGCTGTGCAATACTTGTTGGAGCGACATATGCAAGTCCATCATACAATTCCTCAGGATATCAACGGGGACCTATCAAGAACTAAACGGTCTGAAAATAACAACGCAGTGGAAGGAGTATGTTCTCCATGCCACACGGTTGAGAGTCAAGGAACGGAAGAGCGCCGTCGCAAGAACGGGGCCGTCGCGTTGCAGTGCGCGTACTGCGGGGAGCGGACGCGGAGTCGAGCCGAGTTGGAGGCGCATACTCGGGCGCACTCGGGAACCACTGCGGCGAGACATAAGTGTCTCATTTGTGATGAAGTTCTGCCTTCTGCTGGTGTGCTCGCCGAGCACAAGCTGACGCACTGCAAGGTAGTTGCTGGTGATACGTGTGCTAGATGTCGTTCGAGACTTCCATCAGAAGACGCGTTTCTCACTCACATGGCAAGGCATCATCCTAGCCTCCCCGCGCCGTGTATTATTTGCCGTCAGACGTTAGCCTCAGAGGCCGAGGCACGACTACACGCCAGGTTCCACTTACGGCCAAACGAAGACGAACAAAGATGTGCAATTTGTTTGAAAACGTTATCTGAGAGTGAAGCTGGAGAGGGCGTTCGCGCGTGTTCTTCCTGTTATGCGAGACATGCCACTCCACGTCCTCCTCTTCCGAGCGACAATGACTGCAGACTCTGTCGTCGAGCGCTAGAGTCCCCAACTCGTCTGCAGACACATCTTATCGAGCACACCTTCGCTGGCATCGGCTCTTTCAGTTGCTATCTATGTTCAGCCGTATTCACAAGTGCGGCGGGCTTACAAAGGCATTTACCCGAACATCCCGCCGCCGCTAGGCCATACGACTGTGGTCGATGTGGTCTTAAGTTCTTCTTCCGTGCGGAATTGGATAATCATGCATTGATTCACCTCGAGGAAGCTGAATTAGCTCAGAGAGCGTTCTATGAAGCGTATGCTCGAGGAGCAGCTTCAGCTTGGGTTGCCTTGCAATCTGATTCGTCTCCAAAAACTGTATCTACGCCGGTTACGGAAGTACAGGTGAAACAAGAAAGTGAAATTAAGGAAGAAAAGAATGATGAATATATAGAAGTGTCATCGCCACCTCCAGTTCAGCCAACGCCCACGCCGTCTATATCACCTGTTGTAAAACAAGAAAAGCTTGATGAAGAATAA
Protein Sequence: MLFKGNSSRLEHLIEKIQANKENHDVSSDDIKGAETVIRYPVGISIFLPPVQCPKLPDVGKTCLQKIINISHWWDSNPRPIDAQGKCSTERANESLPNGNLFSIDIIEALGSVSSTAGSSWPSSTPEPSPSPASTPTSADAADPEAEGEPPFTLGATEHTPYQCQFCDKAFPRLSYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRDGQEVDRRRALRCVRCRESFRRPELLQAHMTTAHGAMTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRASHSALINGELSATTVEQPAPTDLSRRGSEGTPPVKRPRSSSGTVTPQTVLSPSTLLCNQCDAALPDFEAFRAHLKGHLEEGADLSHTGATPCLHCGATFTDPVASERHLAAHYLAVSCEYTCHSCTRSFPAPDDLQKHLFEHHAHSLYRCTLCKEIFESKVAIQVHFAVAHSGESKIWVCRSCGSNGGALRSEAECTAHVRNRHAASRCACGAVLAGARALREHAAAHHTYRCPVPTCTDTFAVQYLLERHMQVHHTIPQDINGDLSRTKRSENNNAVEGVCSPCHTVESQGTEERRRKNGAVALQCAYCGERTRSRAELEAHTRAHSGTTAARHKCLICDEVLPSAGVLAEHKLTHCKVVAGDTCARCRSRLPSEDAFLTHMARHHPSLPAPCIICRQTLASEAEARLHARFHLRPNEDEQRCAICLKTLSESEAGEGVRACSSCYARHATPRPPLPSDNDCRLCRRALESPTRLQTHLIEHTFAGIGSFSCYLCSAVFTSAAGLQRHLPEHPAAARPYDCGRCGLKFFFRAELDNHALIHLEEAELAQRAFYEAYARGAASAWVALQSDSSPKTVSTPVTEVQVKQESEIKEEKNDEYIEVSSPPPVQPTPTPSISPVVKQEKLDEE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00430847;
90% Identity: iTF_00710405;
80% Identity: -