Acar006522.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989976.1:2669480-2681057[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.014 1.4 9.9 0.2 3 23 44 64 42 64 0.97 2 15 0.0011 0.1 13.4 2.8 1 23 152 174 152 174 0.99 3 15 2.9e-05 0.0029 18.3 1.1 1 23 180 203 180 203 0.97 4 15 0.0088 0.86 10.6 3.9 1 23 208 231 208 231 0.94 5 15 2e-06 0.0002 22.0 0.3 2 23 389 410 388 410 0.98 6 15 0.00028 0.027 15.3 1.9 1 23 416 438 416 438 0.98 7 15 0.29 28 5.8 7.2 1 23 491 513 491 513 0.96 8 15 2.8 2.8e+02 2.7 1.1 1 23 520 542 520 542 0.92 9 15 0.00016 0.015 16.0 2.9 1 23 548 570 548 570 0.98 10 15 6.6e-05 0.0064 17.2 2.0 1 23 576 598 576 598 0.97 11 15 0.00032 0.032 15.1 2.1 1 23 607 629 607 629 0.98 12 15 7.6e-05 0.0074 17.0 0.6 2 23 675 696 675 696 0.97 13 15 0.0038 0.37 11.7 3.2 1 23 713 735 713 735 0.96 14 15 1.5e-06 0.00015 22.4 0.7 1 23 741 763 741 763 0.98 15 15 3.6e-05 0.0035 18.1 5.2 1 23 769 792 769 792 0.98
Sequence Information
- Coding Sequence
- ATGACAAACAGTGATAATAACATTAATTCTGATATAAAACCAATTATCAGAAATGGTAAGGTAAAAAAAGAGAAAAAGAACAATTTTGTATCACAAAAAATAACAGAAGAAGGATATCCGTTCTATGGTTGTTCTGTATGTAATATAAGTTTTTCATTACTCCGAGAATTAGATACACATGTCACTACACACAAGGATAGGATAACTAGCTATGATTTACGAATAAAAAATCAATTAAAGAAGAAAAAGTTAAGAAAGGAACAGAAGAAACTGAAGAAAATGAAAAAAGAAAAACAATTAGATGTTGAAATAAAGCCAGAGGATGGATATATCGGTAGTGAACAAGCATCGGAGTTTGGTTTAAATAATAATGAGGCAGAAAACAAAGATGAACCGGAAACGTTAAGGGAAGAAATGGAGAAGAAACAGGAATTAATGAATTTACAGAAGATTTATAAATGTTTTGCGTGTCAGAAACAATTTACTTTGAGTTATTATTTGAAACTTCATGTCAGGTCACATACAGATGAAAAGCCATACACTTGCGAGCAGTGCGGACAGTCATTCATAACGGCTAGCAAGCTGGGTCGGCATAATAAGAGGTTCCACTTGTCCGTGCAATACCAGTGTAGGATATGTTACAGACAGTTTTACAGATTTGAACTTTTAACGAGGCATTTTGATAAGAAGCACGCTGATGACAAATTGGAAGGAGAGCCGTATGATTTCAATGCAATATTGCCATATTTAAAAGAATTAGAAGAGCAATTACGCGAGAAACAAGAAGCAGAAAAGACTAAACCCCCCGATGACTTGTGGTCAAACGAATGGCCCAACATGACGTCGAAACAAGACAATCAAATGGACCAAACAGACCAAATAGACAAAAAAGACCAAATACAAGTTAAAGAGTGTAAATTAGAGATAGAGATCGAAGAAGTGAAAGTTTCTATGGATGATGTTGAAATAAAACAGGAAAATGATGATGTTGATGATTCGGCTGTTGATAATGATGTTGTGAATGATAATGATAGCGTCAACTGTGATTTGAAGGATGAAGTTAGTTTGAAGGATGACGATTCCGATGAAGACTACTTTCCTTCAAACACTTGGTTGAAGGCCGAAGAGCCTCTTGATGTTACCCCAAATACGACAAATAGCGTTAAGTGTCCCGTATGCGAGAAGAGTCTCAGTACAGCGTCATATATGCGCGTGCATATGCGCACGCACACGGGCGAGAGACCTTTCAAATGCTATATATGCAACATGGGGTTCATCACGGCGAGTAAGATGCATAGGCATGTTCTTACACACCCTGAGTCCTTGAAAGACGACGTGAAAAAAGAAAAGACGGAAGCCGATGTCAAATGTGAAAATGTCGACGATGTGAATACAGAGAAAGTTAAGAAGGCAGTCAAGAAGTTATCGAAAAAATTAAGCGAGAAAAGTAAGAAGTACAAGAAGCGGCCACACGCTTGCGAGTTTTGTCACAAGCGATTCCTTCATCTTGATACTTTACAGATACACAAGAAATCTCACGATGGCGAAGAGATAAAGTACAGGTGCCATTTCTGCCTGCTCGAGGTGCTAGATGAAGATAGTTTGAAGTCCCACGAGAGCACCCACAGCGGGGCGAAGCCCTATCAGTGTACTATATGCGGGAAGTTCTATAAAAAGAGGGAGAGTATGATATACCACAGAAAGAATCACAAACCGGACCGCGAATTTATATGCGATATTTGCACCAAGTCGTTCAACGCTCAATGTAAACTACAAAGGCACATTATAAGTCACAGTGTCGATAAATACATGTTGAAATACGAATGTCCGGTCTGTGCGCACATGTTCAATACGAAGTACCACGTGCAGATGCATCTCGCCACGCACCAAAGGGAAGGAGTAATCCAAGAAGAAAATCGCAACGAAATCCTCGCTATGGTTCTTCAGAACGCCCGAAGGATCCCGCGTAAAGGTGAAACCCACAACCTCACTGACGTGATCCCTTCGGACGAGAGAAGCCGAGTGTGCAACATATGCGGGGAAGTGTTCCAGCACTTCTACTACCTCGAGGAACATTTGAAAAGCCACGGCTCGAAAATCGCGATAGAAAACATCGATAAAGTCGAAGAAAAGAAATACATATGCGAAGTTTGCAATAAGGGCTTCAAATTGCATTATTACTTGAAGTTGCACAGTTTTACACACACTAAAGAGAAGCCCTTCATCTGCCAGCAGTGCGGGAAGGGATTCATCACGCGGGGCAAGTTGAAACGGCATTTGGAGACCCATACGGGGCTCAAAAAGTATCAGTGTCATATCTGCTGTAAATTCTTCACGAGGCCGAGCTATTTGAGGATCCACGTGCGTACGATACATGGGGCGCAGTTGGTTCGACTTGGTCTCACGTAG
- Protein Sequence
- MTNSDNNINSDIKPIIRNGKVKKEKKNNFVSQKITEEGYPFYGCSVCNISFSLLRELDTHVTTHKDRITSYDLRIKNQLKKKKLRKEQKKLKKMKKEKQLDVEIKPEDGYIGSEQASEFGLNNNEAENKDEPETLREEMEKKQELMNLQKIYKCFACQKQFTLSYYLKLHVRSHTDEKPYTCEQCGQSFITASKLGRHNKRFHLSVQYQCRICYRQFYRFELLTRHFDKKHADDKLEGEPYDFNAILPYLKELEEQLREKQEAEKTKPPDDLWSNEWPNMTSKQDNQMDQTDQIDKKDQIQVKECKLEIEIEEVKVSMDDVEIKQENDDVDDSAVDNDVVNDNDSVNCDLKDEVSLKDDDSDEDYFPSNTWLKAEEPLDVTPNTTNSVKCPVCEKSLSTASYMRVHMRTHTGERPFKCYICNMGFITASKMHRHVLTHPESLKDDVKKEKTEADVKCENVDDVNTEKVKKAVKKLSKKLSEKSKKYKKRPHACEFCHKRFLHLDTLQIHKKSHDGEEIKYRCHFCLLEVLDEDSLKSHESTHSGAKPYQCTICGKFYKKRESMIYHRKNHKPDREFICDICTKSFNAQCKLQRHIISHSVDKYMLKYECPVCAHMFNTKYHVQMHLATHQREGVIQEENRNEILAMVLQNARRIPRKGETHNLTDVIPSDERSRVCNICGEVFQHFYYLEEHLKSHGSKIAIENIDKVEEKKYICEVCNKGFKLHYYLKLHSFTHTKEKPFICQQCGKGFITRGKLKRHLETHTGLKKYQCHICCKFFTRPSYLRIHVRTIHGAQLVRLGLT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01205912;
- 90% Identity
- -
- 80% Identity
- -