Basic Information

Insect: Anthocharis cardamines
Gene Symbol: -
Assembly: GCA_905404175.1
Location: FR989976.1:5018819-5022351[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00014 0.014 16.2 0.3 1 23 8 30 8 30 0.97

2 14 0.0017 0.17 12.8 0.5 1 23 37 60 37 60 0.97

3 14 0.0014 0.14 13.0 1.4 2 23 68 90 67 90 0.94

4 14 2.1e-06 0.00021 21.9 0.9 2 23 96 118 95 118 0.97

5 14 1.8 1.8e+02 3.3 0.8 1 23 124 147 124 147 0.85

6 14 3.2e-05 0.0032 18.2 2.3 1 23 153 176 153 176 0.98

7 14 0.00067 0.066 14.1 1.8 1 23 305 328 305 328 0.93

8 14 0.0015 0.14 13.0 0.4 1 20 352 371 352 374 0.95

9 14 0.0037 0.36 11.8 1.6 1 23 379 402 379 402 0.96

10 14 0.00038 0.037 14.9 1.6 2 23 410 432 409 432 0.96

11 14 4.5e-05 0.0044 17.8 0.4 2 23 440 462 439 462 0.95

12 14 0.00028 0.028 15.2 0.4 1 23 468 490 468 490 0.97

13 14 1e-05 0.001 19.8 1.2 1 23 496 518 496 518 0.98

14 14 4.5e-05 0.0044 17.7 4.3 1 23 524 547 524 547 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00014	0.014	16.2	0.3	1	23	8	30	8	30	0.97
2	14	0.0017	0.17	12.8	0.5	1	23	37	60	37	60	0.97
3	14	0.0014	0.14	13.0	1.4	2	23	68	90	67	90	0.94
4	14	2.1e-06	0.00021	21.9	0.9	2	23	96	118	95	118	0.97
5	14	1.8	1.8e+02	3.3	0.8	1	23	124	147	124	147	0.85
6	14	3.2e-05	0.0032	18.2	2.3	1	23	153	176	153	176	0.98
7	14	0.00067	0.066	14.1	1.8	1	23	305	328	305	328	0.93
8	14	0.0015	0.14	13.0	0.4	1	20	352	371	352	374	0.95
9	14	0.0037	0.36	11.8	1.6	1	23	379	402	379	402	0.96
10	14	0.00038	0.037	14.9	1.6	2	23	410	432	409	432	0.96
11	14	4.5e-05	0.0044	17.8	0.4	2	23	440	462	439	462	0.95
12	14	0.00028	0.028	15.2	0.4	1	23	468	490	468	490	0.97
13	14	1e-05	0.001	19.8	1.2	1	23	496	518	496	518	0.98
14	14	4.5e-05	0.0044	17.7	4.3	1	23	524	547	524	547	0.98

Sequence Information

Coding Sequence: ATGAACGAGCATTATAGAAATTTTATATGCACCATTTGCGGTGCCGGATTCGTCAATAGCTTTCGATTGAATCGTCATGAAACTACTCATGTCAAGAAGAAATCCAGTTTTCCCTGTCGGCATTGCGGACAGGTATTCGCTGCTGAGTCCAAAAAGAAGGCTCATGTTAATACTGAACACAAGGGAATTGCTGGTGATAGTGTATGCCAAATATGTAAAGCGAGATTTAAAAATTACTACCAAAAGACTAGGCATATGTCACAAGTGCATAATGTTGAAGGTATCAAATGCGATATGTGTGAGAAAAAGTTCAATCTTAAATCGAATTTGATGCTGCATATGCGCAGTGTTCACTTAAAAGAGAGACCATACGCTTGTTCCGTTTGTAGCATGGGATTTTTTATCAAGCGACACATGCTAGGTCATTACTTGGCCACGCACACTAATGAGAGAAAGTTTAAATGTGACATATGCAGTAAGGCGTATGCGACGCAAAATAGCAGACGAAAACACATGAAGAAGAATCATGGTAACGTCACCACAAGCCATAACAAAATAAAATTAAAAGACAGTACAAGTTCAGATGTCTTTGAACAAGTAGTTAATATAAAGATTGAACTAGAGGAAGTGGATCCCCTCTCTGATACTGAAGACAGTGTACCACTTAAGGCTTTCCAAGATGAAAATAGGAGTGTAGAAATTGAAGGTGTACAACGTAAAAATTGCACCAGAGACAAAGCCGAATCCTCCTCTAAATTATTAAACCGGAAAATCGTTGTAGAATTATCTGTGAACGAAAGTGGAGACGTCCCGGAAGCACAAGAAAGGGATATTAAAAAACATCGTTTTAATTTAAGACAAATATTAGAGTTTTCTAACGCCACACCCATCCGATCCCATCGTGGTATAGGCTATGTGTGTTGTTTCTGCCAACAACAGTTTCCTGAACCGTCCAATTTAAAAAAGCACACGCTAGATGATCACAAACAAAAGTTCGATCTGGACACGAAGAATGGACGTTTGTTGGAACATATGAATACGCATTTTCGAAATTACATTTGCGACGAATGCGATGCTGGATTCGTTAACCGAGCGATGCTCAAAAATCACGTTACATGCCATGAAACTGGATCATTCACATGCGATTGGTGTTCCAAGGTATTTACAAACATACGTAAGAAGAAAATGCATGAGAAAACAGTGCATATATACTGTGGAAAGGTTAATAGATGTGGGTACTGTGGAGAGATGTTTACGACACACAGGTTGAAGGAAAAGCATATGATAAGCGAGCATGGTGTTAAAATAGCGGGAATAACCTGTCAAGCTTGCAACAAAACATTTGCTACTCAGGGAGCACTTAGGATTCATACAAAGCGTGATCATCTGGTTGAACGGCGATTTGTGTGTACAATGTGCGATATGAAGTTCTTTTTGAATGCCGAATTACAGGATCACATGGTGAAACATACTGGTGTCCGGACTTTTGAATGTGGAGTGTGTCATAAAGCGTATGGGCGACAAAAGACTTTACGAGAACATTTGAGAATACACGAAGACGATCGAAGGTTCAAATGCGAGCATTGTGGACAGGCTTTTGTACAGAAATGTAGTTGGCGTGGTCATATGCGATCGAAACATGGAGAGGATGTCTAG
Protein Sequence: MNEHYRNFICTICGAGFVNSFRLNRHETTHVKKKSSFPCRHCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMSQVHNVEGIKCDMCEKKFNLKSNLMLHMRSVHLKERPYACSVCSMGFFIKRHMLGHYLATHTNERKFKCDICSKAYATQNSRRKHMKKNHGNVTTSHNKIKLKDSTSSDVFEQVVNIKIELEEVDPLSDTEDSVPLKAFQDENRSVEIEGVQRKNCTRDKAESSSKLLNRKIVVELSVNESGDVPEAQERDIKKHRFNLRQILEFSNATPIRSHRGIGYVCCFCQQQFPEPSNLKKHTLDDHKQKFDLDTKNGRLLEHMNTHFRNYICDECDAGFVNRAMLKNHVTCHETGSFTCDWCSKVFTNIRKKKMHEKTVHIYCGKVNRCGYCGEMFTTHRLKEKHMISEHGVKIAGITCQACNKTFATQGALRIHTKRDHLVERRFVCTMCDMKFFLNAELQDHMVKHTGVRTFECGVCHKAYGRQKTLREHLRIHEDDRRFKCEHCGQAFVQKCSWRGHMRSKHGEDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -