Acar020832.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989954.1:9423468-9432383[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0028 0.27 12.1 1.0 3 23 263 284 262 284 0.96 2 23 0.19 19 6.3 0.3 1 22 657 678 657 678 0.95 3 23 3.8 3.7e+02 2.2 0.3 1 22 720 741 720 743 0.82 4 23 0.0037 0.36 11.7 0.7 3 21 754 772 752 773 0.94 5 23 0.59 57 4.8 0.2 3 23 782 803 780 803 0.89 6 23 0.023 2.3 9.2 0.1 3 23 823 844 821 844 0.96 7 23 0.0044 0.43 11.5 2.4 1 23 850 873 850 873 0.95 8 23 0.071 7 7.7 0.0 1 23 899 922 899 922 0.90 9 23 0.022 2.1 9.3 3.3 1 23 927 949 927 949 0.96 10 23 0.072 7 7.7 0.1 1 23 955 978 955 978 0.95 11 23 8.2e-05 0.008 16.9 1.6 1 23 991 1013 991 1013 0.97 12 23 0.0001 0.0098 16.7 1.8 1 23 1062 1085 1062 1085 0.97 13 23 0.0016 0.15 12.9 1.7 1 23 1145 1168 1145 1168 0.96 14 23 0.00099 0.096 13.5 1.4 2 23 1188 1210 1187 1210 0.95 15 23 0.019 1.9 9.5 0.1 2 23 1216 1238 1215 1238 0.95 16 23 0.0056 0.55 11.2 0.2 1 21 1281 1301 1281 1302 0.95 17 23 0.0007 0.068 14.0 0.6 1 23 1312 1334 1312 1334 0.93 18 23 0.00012 0.012 16.4 0.3 2 23 1428 1450 1428 1450 0.93 19 23 1e-07 9.9e-06 26.1 1.1 3 23 1457 1477 1456 1477 0.98 20 23 0.0011 0.11 13.3 0.1 1 23 1495 1518 1495 1518 0.94 21 23 0.069 6.7 7.7 0.0 1 23 1540 1562 1540 1562 0.97 22 23 0.0068 0.66 10.9 0.4 1 23 1568 1591 1568 1591 0.95 23 23 0.00014 0.014 16.2 0.4 1 23 1599 1622 1599 1622 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCCTGCCCTTGCATCGAAAATCAAAGATTGCGTGTCCGTTCAGATAAATGAAAATGACGTCCTGCCAACTAATGTCTGCAGGAAATGCATGGATAATGTCAATAACTGGCAAACATTTAAGACAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTAACAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAACCTAATGAAGGATTGTCTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGATCATATCCTGAAGTTGAGGAAGCAGGGCCTTCAAGTAAAGTTCAACCTGAAGGTCCACCAATCTTGGCTTCTTTGGGACTCACTCCTAGAAGTGATAAGAAAAATATAGATCCTCGAATGGACTGGCAACGAGTCCATGCAATACTGGATATTATTAAAGAAGATGAAGTGATTGACTCTCTACAGTCAACAGAAGAGTGTGAAGTTTGTCATATGTCAGATCATGACTCAGACATAGAAACTGAGTTAAATCATGAAGGTGTTGAAAGTGAAAAGGAAGAAGAGGCAATGGAAGACGAGGAGATGACTGAAGAACAAGTTTATCCAGACCCTCCCAATGTTCCAGAAGTTTCAATTACGGTAATGCGGCCCACAGGCGAGACATTACATGCGCGTCAAGGAATTCAACAACTCGCTTCAAAAGATTGTCTCGTATGCGGTCGGTCTTATAGGTATTCCCACAATGCTCGCCGACATGAACTTACAGCACACAGTTTTGATAGATACACAAACAAAATAACTCATAAAAAGACTCATAACCGTATGCAACCAAAACTTCGGCCTAATCCATTTAATCCTAAGTCTCGCTTAATGCCAAATCCAATAAACCATAAAATGCAACTCCTTCCAAAGCAATCCACATCATTTAAACTCATCCCACAGAAAAATGTTCCACCGAAACCTATTCCTATTCGAAATTTGAAATCTTCACAGAATAGTTTGCCATATCCATTACGTATTAAAGCACTAAAGGATTTACAAATCAAAAAGAAAGAACCACAAATATTAAAGACGTTACTTTCGACAAAACCAGAGATACTTGTATCAGAGCCTGAAATTGTGAACTCGGAGCCAGAAAGTCCCGAAACATTGATTTCGGAACCTGAAATAGCTTCTTTCCAAGTAGAAACCATTTTGTCAGAACCTGATGGCTTTGTAGACCAACAAGATGACGCTGAAAAAGAAGAGGATATGCAAAATCATAATCAAAATTATGATACAGTAGAAATGGATTCTGAAAATGAAATCGAAATTGCGCGCCAACGTGAAAACGAAGAAGAAAATGAGATTTTACCTGAAAATGAAATTGATGAAAACATAAATGACGAAGAAAACAACGCAGATGGAGAAGAAAATGACATGAAAAAAGATACAGAAATGGAAAGTCATGAAAATGTTCTCGAAGAGCAGAATGAGGAAGGTAATGAAGAACCGAATGACCTTAAAGAAGTAGATGCGAAGGATGAAGGCGATCACGACGAAAGTCAAGAAAACGAGGATTACGATCAAGATGGAGATCTCCCTCCAGTGGAAATCGCACCTGTTGTTGAAATAAACGAAGATTTACAGCAAACAAATTCTTACAGCGAGATAGAACTTGAACTCGATTATTCAGCGGACCCGAATGACGTCGTGGACGGTGACGATGGTAAAGATCTCGATCCAGACAAACAGTATGTCACAAAAACTCAAAGAGATTTTATCAACAAATATCGTGACATAATTGAACAGATCAATACTAAGAGATGTCTTTGTTGTAACAGAGAGCATCCGCGTAGAAAAGCCGTTATACAACACTTGCAGAAAAACGGACACAAAGTACCAAAACACACATGTTACAATTGTGTGGTAACCTTTGGTCACATCGGCGCCTTGCTGAGTCACATGAGGTCTAACACTTGTACTGATTTGTGGAAAATTATCTACAACGAAAGTGGTATTTCTGACGATCAAGTTCTCTCAGACGAACCGAAGGATCCTAAAGTACAATACAAAGATATATTCAATGCACGTTCATATGCTTGTAAGCTATGCCCTGCTAAATTTCAACTGAAACAGTTTATAATGAAACATGTTTTAGATGTCCATGAGGATGGTCAGTCTAGGGTACATCTCGCTTGCGTACACTGTGGATCCCGATTCAAAGATAAAAATTTATGGAAGAAACACATCCGCAATGGTGAATGTACTGTTTATATTGCATGTGATTTGTGTTCTGAAAAGTTCGGTAACATGCATGATTTCAATGAGCACGCACTAGCTATTCACGCCGGTAGTTTTGACCCTGATAATCAGAACAAATGTGTCGACGGTCGTCCTACAGATTGTCCCATTTGCGGTAAGAAGAACAGTGGCTACCCGAATTTAGTAAAACATTTGAAGATAATTCATAACGAAGAAAAACCACATTATTGTCAACATTGCGATTCTAAATACGAACAAGCCGCTGATCTCAATAAGCACATCTATATGGAGCATTCGGAGAAGGCCTTAGGGGTGCAGTCCTCTGAGCCTGACATGTCGCTTGTAAAAGAGGAGACTGAAGAATATCACTATTCTTGTACTGAATGCAATGCCATATTTGAGACTGTCGACGCGTGGACTGATCACCAGGTAGCTGAGCATAATCAGGTCGCCCATCATTGCGATCAATGTGAAAAGAAATTCCTTCGACCATCGGAACTGGCGGAGCATAAGAATAGCCATTTACGAGTCAAGTTCTATCCGTGCAGTCTGTGTGCAAACTCATACAGCACTCCACAAAAGCTGTCTGAACACGTCCAACAGGTCCACCCAGGGTCCAGCACGATCGGGGCAGGCGATACAGAGTTCTTCTGCGATATATGTGTGAGAACATTCAAAAGCCGTCAAGCGTTTTCAAATCATATGCGTATTCACTCTAAAGTCCCAACTACTAATAGAAAACCTGGGGACCCCAAAAGTTTTGCACCACAGATTATAGGGAAACCGATTCGACATTTCTCCATGGTTCAACCAGCGTTCAGTCCGTTTAAACCGAGTTGCAACGTTCCTAATGCGCCTTATTCGTGTGACATATGTGGTAAAGGATTTATGCATAAGAAAAATATTTGGAAACATAAGAAGGTTCTACACGCAGACCTTTTGAACGATAGACATGACAGTGAAGAGAACACCATGCATGCGTCCACAGAAGAGGATGAATACAACGCAGATGAGAATGGATCACTTCTATCTACGCCTCAATTTGACAGTTTCAATTTCACGAATTTGACAAACACCGTGCAATCAACGCCTTCAGACGCTATGCAGTATTCATGTGAACTATGTTACAAACGGTTTCCACTTAAGACCAGTTTGTGGAAACATAAACGCGCTAAGCACGGCATCATTAACGCCTCTGCGTCTGACACGTCTGTCGAAGTCAATAATAGCAGATCGAGTTGCACCATATGTAAAATATCTTTCGCAGACAAGAAATCTTATTATCGACACAGAAAAAATGTTCACAAGTCGACGGTACAAATGTGTAAAATATGCGGCAAACCGTTGAACTCTACATTGGAGCTCTATGAGCATTTGAAGTCAGCTCACGCCCGAGAATTGTTAGGCTATAATGCCACTCAAGGCCCAAGTAAATCTCAGGATATCGGTCAGGAAATAGAAATGGACTACGAACTAGAACAAGAAGCCGATCCAAGTGCTGATTACCAAGCCCGATATCCGTGTGATACATGTGGAAAACAATTTGTCGGATTGTTGGCTTTGCAAAATCACCAATGCATCAATCAACTGCCCCAACAACCGCAAACATTTGACTGTGAAATATGCCACAAGAGTTACACTTCGATAGCTGCGTTAAAGAGTCATCGTGGATGGCATTTACGTTCCCCTGACGGCAAAGCTGCGGCGAACAACAGCGGGCTTTGGATGCCGCAAAACAAAGTGACCAGTAAAGTTAGTAAATATGAAGTCGTAGACGCGTCACAATTAGCACGCGTATCACATACAACTACATCGACTCCACCGGTTTCCCTCACCAAACGGAGATTACCTCCTGAAGTTGAGGTGACTGTCGTCAATCCGAATAAAAAATTGCGTTCTGACGATTCCATAGAAATGGACCAGTCGACAAATATGTCAACCCCAGCGGATGACAGATATTGTAATATATGCGATCGAGAATTTACCAAACGGGCCGCTTACCAACGCCACATGGACGAGGTGCATCAACCGAACTCAGTGTTTTGTCCGGTCTGCGATAAGAGTTTCACCCGAAAGTCTACTCTGATTGTGCACATGAAGAAGCACTACGATTCTGGGGAAGGGAGTTCGGGGATGAATGCCCTAGAAGAGGACGCTCACGCGTGTGAAGTTTGCGGAGAACAGTTCGAAAACGCTAATGCTCTGAACGTACATCGCGAGTCACAGCACGGTGATGAAGAATCTGGGGAATCCGAAGACGATGGTTCCGTGCCACTACTTCAGCCTGGCGAGTTCACGTGTGGTCAGTGCGGAGACGGTGTGGCCACACCTCGCGATTTGATCGCGCATCGCACAATGCACTCCACACCAACTAAATTCTTCTGCAACATTTGCAAAGTCTACTTCGCGAGAGCGATCGACTTGTCTTCGCACACTCGCGCGAGGCACTCCGACAACGACAAGGTGTTCTTCCCGTGCGCTATGTGTGACCGGTTTTATATGAACAAGAAGAGCTTGCAGCGACACATTGAGATGGCCCATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPALASKIKDCVSVQINENDVLPTNVCRKCMDNVNNWQTFKTVCERTQNKLQSLINKESSHLEEIHIKTEPNEGLSDEAYDDGVVIDGSYPEVEEAGPSSKVQPEGPPILASLGLTPRSDKKNIDPRMDWQRVHAILDIIKEDEVIDSLQSTEECEVCHMSDHDSDIETELNHEGVESEKEEEAMEDEEMTEEQVYPDPPNVPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITHKKTHNRMQPKLRPNPFNPKSRLMPNPINHKMQLLPKQSTSFKLIPQKNVPPKPIPIRNLKSSQNSLPYPLRIKALKDLQIKKKEPQILKTLLSTKPEILVSEPEIVNSEPESPETLISEPEIASFQVETILSEPDGFVDQQDDAEKEEDMQNHNQNYDTVEMDSENEIEIARQRENEEENEILPENEIDENINDEENNADGEENDMKKDTEMESHENVLEEQNEEGNEEPNDLKEVDAKDEGDHDESQENEDYDQDGDLPPVEIAPVVEINEDLQQTNSYSEIELELDYSADPNDVVDGDDGKDLDPDKQYVTKTQRDFINKYRDIIEQINTKRCLCCNREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNESGISDDQVLSDEPKDPKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVHLACVHCGSRFKDKNLWKKHIRNGECTVYIACDLCSEKFGNMHDFNEHALAIHAGSFDPDNQNKCVDGRPTDCPICGKKNSGYPNLVKHLKIIHNEEKPHYCQHCDSKYEQAADLNKHIYMEHSEKALGVQSSEPDMSLVKEETEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSLCANSYSTPQKLSEHVQQVHPGSSTIGAGDTEFFCDICVRTFKSRQAFSNHMRIHSKVPTTNRKPGDPKSFAPQIIGKPIRHFSMVQPAFSPFKPSCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHDSEENTMHASTEEDEYNADENGSLLSTPQFDSFNFTNLTNTVQSTPSDAMQYSCELCYKRFPLKTSLWKHKRAKHGIINASASDTSVEVNNSRSSCTICKISFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSAHARELLGYNATQGPSKSQDIGQEIEMDYELEQEADPSADYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSHTTTSTPPVSLTKRRLPPEVEVTVVNPNKKLRSDDSIEMDQSTNMSTPADDRYCNICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDSGEGSSGMNALEEDAHACEVCGEQFENANALNVHRESQHGDEESGESEDDGSVPLLQPGEFTCGQCGDGVATPRDLIAHRTMHSTPTKFFCNICKVYFARAIDLSSHTRARHSDNDKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -