Acar006473.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989976.1:4550595-4552016[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-08 3.6e-05 23.7 0.1 2 39 16 52 15 57 0.93 2 2 8.8 6e+03 -2.6 0.0 3 13 76 86 75 88 0.85
Sequence Information
- Coding Sequence
- ATGGAGCGAAATCGGAAGAGAAAGACGGATAGGGGCTTGCATATTGAGGACAATATGCGAGCAGCTGTTAAACTTGTAGCAGGTGGTATGAGTTTAAGATCTGCTGCTGACTTAAAAAATGTTAAGTCTAGTACATTACATCGCTATGTCCAAAAAACAAAAGCCGCAGGAGATAGATTAGAAATACCAATGACACCTAACTATGCAGTCAAAAAGGTATTTTCAGATGAACTTGAAAACGCACTGGAACAGTACCTGGTCACTTGTTCAAAGATGTGCTACGGTCTTGATACTTTGGAAACAAGACATTTAGCTTATGAAATGGCAAATTTCCATAGACTTAACATTCCTCAAGCTTGGGAAAATCGAAAAATGGCTGGCATTGACTGGCTTTATGGATTCAGGAAACGCCACCCTGAAATCAGACTCCGTAAGCTGGAGGCCTGCAGCTTGTCGAGGGCAACATCTTTTAATAGGCACAATGTGCAAACGTTTTTTGACAATTTGTTCAGTATTCTACAGAGGTTCCCAAACGATTATCTCACCAGCGAAGTGACAAACAGACAGTTGACTGAGGTAAATCTGCAACAGCAATTTAGAGATCTTGTAACACCTACGTTTGATGACCAGCTGCAGCATTCTATGTCCAGAGCTCCACCTGCGAGTGATAACCAGCAACCTTCCACGTCTAGAGATGCTTCTACGTGTGATAACCAGCAACCTTCTACCTCAAGGGCAGCACTCTAA
- Protein Sequence
- MERNRKRKTDRGLHIEDNMRAAVKLVAGGMSLRSAADLKNVKSSTLHRYVQKTKAAGDRLEIPMTPNYAVKKVFSDELENALEQYLVTCSKMCYGLDTLETRHLAYEMANFHRLNIPQAWENRKMAGIDWLYGFRKRHPEIRLRKLEACSLSRATSFNRHNVQTFFDNLFSILQRFPNDYLTSEVTNRQLTEVNLQQQFRDLVTPTFDDQLQHSMSRAPPASDNQQPSTSRDASTCDNQQPSTSRAAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -