Acar008953.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989969.1:587801-589693[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-09 4.7e-06 26.6 0.0 1 32 18 49 18 57 0.92
Sequence Information
- Coding Sequence
- ATGCCAAGGACTTATCAGAAACGTTTAGGCTCTCGTGCTTATAAGAATTATAGTAATGAGATATTAGAGCGAGCTATAACAGCAGTTTCAGAAGGTCATATGACCTTACGAGCGGCCTCTGAAAAATATCATATCCCGTATGGTACAGTTTTCAACAAATACCATGGGAAATTCATAAAAAAACCGGGAGCTCAGCCAGTATTTTCTGAAAATGAGGAGAAATCTATATTAAAATCTTGTGCTAAATGTGCTGATTGGGGATATCCCCTTACAATCTTGGATTTGCGCATGTTCGCTAAAATTCTCTTAGACACACAAGGAAGAACAGTTTCCAAGTTTCAGAATAATCTCCCTGGACAAGACTGGGCTTACTCACTGCTGAAGCGACACAAAAATCAGTTTTCTCAACGGGTTGCTGCTAACATTAAACGAGCTCGAACTGCTGTATCCCCTGAAAGTATCGAAGAATATTTCATCAACCTCGAAAACACTCTGCAAGATGTGCCTGACTCAAATATCTTCAACTACGACGAGTCTAACTTAAGTGACGATCCAGGAAAAAAGATAGGGATATATCGCAGAGGTGTCAAATATCCGGAAAAAGCAATAAACTTTTCTAAAAGTGCAACATCTGTTATGATTTGTGGTTCTGCTGATGGGGTACTTTTACCGCCCTATATCATATATAAAAGCTTACACCTTTATGACACCTGGAAAGAGAGAGCTCCGTGCGGTCCGCCATGTTGTGATCAGCCTTGTTGCTCAGCAGGATCACGATTCAACCGTACAGCTAGTGGATGGATCGACGCACCGACATTCAGGGACTGGTTTGTGACTTGTTTTTTGCCTCATTCAAAAAGATTACCCGGACGCATTTGTCCTTTTAACAAGCAAAAGGTTCTTGACCGCTTTCCGAAGGAACATGATATTGCAGATCAAGAAATTGAAAGCACATTAACAAATTTTTTGAAGGAATCAAGATATGGAACCACTTCAAACAAACCTGCAAGAAAGAAAAGACGTTTGGATGTAGCTCCCGGCAAAAGTATTGCAATGCGAGAGGAAATGCAATCCCAATTTGCAGACCAAACAAGTCGTAATCAAGGAGATGAACAAAATGGCACAGCAGAATCCGATTACCAAGAAATAGAAACTCAAACAATTGAACCTGGTCCATCTCAAGCCAAAACTGCAGATACAGGCAACGAGAACATCCCTGACACTCAACAACATGATAATGACCTTGACGATGAGATAGTAGAACGTGAAGATGACCAGACGGAGTGTACCATCGGAAGATTTATATTAGCAAAATTCTTCACTAGACGTGGCAAAAAGACCTATAAATATGTTTGCCAAATTACTGAAGTAGATCCCTTACTGGTAGAAGGTTACAAGTCAGCAGGAAACAGACAAAAATTCAAAAGAATTAAAGATGACATTTCTGAAGTAGATTACAACGATATTGTATCTTTTTTACCAAAACCTGTAGAGGAAGGGGAATTTGTTACCTTTCCCTTTGATATTAATATTCAAGAATTATAG
- Protein Sequence
- MPRTYQKRLGSRAYKNYSNEILERAITAVSEGHMTLRAASEKYHIPYGTVFNKYHGKFIKKPGAQPVFSENEEKSILKSCAKCADWGYPLTILDLRMFAKILLDTQGRTVSKFQNNLPGQDWAYSLLKRHKNQFSQRVAANIKRARTAVSPESIEEYFINLENTLQDVPDSNIFNYDESNLSDDPGKKIGIYRRGVKYPEKAINFSKSATSVMICGSADGVLLPPYIIYKSLHLYDTWKERAPCGPPCCDQPCCSAGSRFNRTASGWIDAPTFRDWFVTCFLPHSKRLPGRICPFNKQKVLDRFPKEHDIADQEIESTLTNFLKESRYGTTSNKPARKKRRLDVAPGKSIAMREEMQSQFADQTSRNQGDEQNGTAESDYQEIETQTIEPGPSQAKTADTGNENIPDTQQHDNDLDDEIVEREDDQTECTIGRFILAKFFTRRGKKTYKYVCQITEVDPLLVEGYKSAGNRQKFKRIKDDISEVDYNDIVSFLPKPVEEGEFVTFPFDINIQEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -