Acar017585.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989962.1:11664520-11666986[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.4e-09 5.1e-06 26.5 0.0 1 36 10 45 10 50 0.92 2 2 6.9 4.7e+03 -2.2 0.0 30 45 121 136 121 136 0.76
Sequence Information
- Coding Sequence
- ATGGATAAGAAGAAACGTAAAACTTACACTGACGCCCAGTTAAAGGAAGCTCTTGCATCGATTGCGAAAGGTGTAAGTGTATATCAAGCTTCTAAACAATTTCACATTCCTGAGACTACATTGCGAAATAAGCGTGATGGAAAATACGGAGAGAATAAATGCGGAATTACTCCTGTTCTCACTCTTAGTGAAGAAAATCAAATAGTGGATTGGATTCACTACCTTGGACAGTGTGGTTTTCCCGTTACAAAAGATCAACTACTCGAGGTCGTTGCTAAATTAGTTGCGAACCTTAAGCGTTCTAATCCATTCAAAGATGGAGTGCCCGGTAGATACTGGTTCCTTGGTTTCATGAGCCGTCATCCAACATTATCTAAACGTGTGGCTCAAAATTTACCCACGAGCAGAAATCAAGTGACTGAAGAGGGGTTAAGAGCATGGTTTGAGCGAGTTCGAGGGTATTTTGAGTCAAATGAAGTGATCGATAATATTAAAACTCAAACCTCAAACAATCAAAAAAATACTAACCTCGAGCTGGGAGATATCACTCTTGAGAACAATTATATGGATCCCGACAATATATCAGAGGTTGTTTTAAACTTTGACGTGAGATCTGACGTCCCTCAAGAAATTGTCACTCATATGATTGCTTCTGTAACTCATAATGACATTGAAAGATCAAGTTCTAATATAAATTTAAATAAAATTACTACACAGAAACCCTTCTTATCTACTTCTCTTCAATCGCTTGGTACATCAGATATCCAAGTTAGGCCAGGTACTTCACAAATGGATATTCAGGCAGCTATCGTGCCTCAAGAGATAAAAGACCTAAAAGAAAATATGCGAACATCTACTCCCGAGTCTATCAATAAATGTTTCAGTCCTCAGCTCTCAGTATCAGAAATAGAAAACTCAGATAACGAAAGTACTTTATGCATATCAAAATCTCTTTTATCCCTAAAACCACATGAGTCTAAAAACGTTTATAATGATCTTGATACAAATCTATTTACAAACACACCAAAAAAACCTGAAGACATGCCAAGTACCAGCAGTACTATCCCGAGACCGGAGAAAGATTTTCCAACACCATTCAAACAATTAACAACACCTTTCAAAAATGCGTTTTATTTTCCCAAAAAAGTAGAACCAACTAAAAAGAAAATAATAAAAAAAGTGACACCAACTGTAGCTATTGCTGAAGAATTTATGGAACATCAAAGAAGAGTAGAACAAGAGAAGGAAGAAAAAGAAAAACTTAAATTAAAACGTAAACAAGATGCAATAGAAAAAAAAAACAAGAAGAAAATTATCTCGGAAGTTACACAGCAAAAGAAAATTAGAAAAAAGCCAAACACGATACAGACACCAGTACTCAGCTGTAATATAACAAGGCTAATCAAAACACCTTCACCACAAGACAGAGAAAACACACATTTCTGTTTAAAGACTCGGGGGGAAATCGATGCTGTGCAAAAAGTCAAGCGTTGCATGTTTGATTCAGACTCAGATGATTCTATTTTTTAA
- Protein Sequence
- MDKKKRKTYTDAQLKEALASIAKGVSVYQASKQFHIPETTLRNKRDGKYGENKCGITPVLTLSEENQIVDWIHYLGQCGFPVTKDQLLEVVAKLVANLKRSNPFKDGVPGRYWFLGFMSRHPTLSKRVAQNLPTSRNQVTEEGLRAWFERVRGYFESNEVIDNIKTQTSNNQKNTNLELGDITLENNYMDPDNISEVVLNFDVRSDVPQEIVTHMIASVTHNDIERSSSNINLNKITTQKPFLSTSLQSLGTSDIQVRPGTSQMDIQAAIVPQEIKDLKENMRTSTPESINKCFSPQLSVSEIENSDNESTLCISKSLLSLKPHESKNVYNDLDTNLFTNTPKKPEDMPSTSSTIPRPEKDFPTPFKQLTTPFKNAFYFPKKVEPTKKKIIKKVTPTVAIAEEFMEHQRRVEQEKEEKEKLKLKRKQDAIEKKNKKKIISEVTQQKKIRKKPNTIQTPVLSCNITRLIKTPSPQDRENTHFCLKTRGEIDAVQKVKRCMFDSDSDDSIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -