Acar001106.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989950.1:4457800-4459077[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-09 9.8e-07 28.7 0.0 1 37 14 50 14 57 0.89
Sequence Information
- Coding Sequence
- ATGTCAGGATCAAAACCTAGAAAAAGAGGTAGTGCATGGGATGAAGATAGTTTAAGACGTGCCATGGAAGCAGTACAAAATAATCAACTTAATACAAATGCTGCAGCGTTAAAATTCAATATTCCAAGACGCACCCTTAGAAACCATTTACTAAGCGGTAACAGTAGTAAAATTATTGGGAAGACAACTGTTCTTACAAAACAACTAGAAGAAGACTTAGCGCAGCGAATCAAACGTTTTGCAAAACTGGGTATACCACTTACCCCTACATTTATCCGGAAACAAGCCTTTTTATTTTGTGAGAGGTTTAAAATCAAGCACTCGTTCAATATGTCTACAAGAATGGCTGGACGTAAATGGCTTAAAATGTTTTTAATTCGAAACCCATCAATATCAAAAACAAACCCCCAGCTAATGATTCCAGTTAGAGCCCAAAAAATTAATAAGCCTGTTGTGAAACACTATTTTGAAGAAGTGAAGAAACTCTATGAAGAGTTAGACATTATTGCACATCCAGAACGCTTGTATAACATGGATGAAAAGGGGTGTCGCATTACAGTCCACAAAGAAAATATAGTGTTGACTGAAAAAGGAAACACCAGAGTACATCTTGTTGCTGAGGAGCATACTGAGAACGTTACTATAGCGATGTGTGTAAATGCTGTGGGTAATGCTATACCACCCATGATTATTTTTAAGGGGAATAGGTACAGATCAGAATTAGGATTGAATTTGCCACATGGAACAAAGGTAAGCATGGCACCCAAAGGCAGCATGACCAGTAGCTTGTTCATAGAGTTCATTCAACATTTTGCTCAACATAAAGCACCCGGTAAGTGTTTGCTTATCTTTGATGGTGCAAAGTGCCATTTAACATATGAGGCTCTGGAAGAAGCAGATAAAAATAATATAGTACTGTATTGCTTTCCTTCTAACACTACGCAAGAACTCCAACCTCTAGACAAATCTGTTAATTTGTCCTTTGAACATCACTGGGATGAAGAAGTGTTGAACTATCTTTGCAATTCTCAAGAGAGAACTTTAAACAAAGTTGCATTTAATAAAATTTTCTCGCGAACATGGCCGAAATGTATAACTCAAACCAATATAACAAATGGATTCAAAGCCACTGGCTTATACCCTTTTGATCCTGATGTTATACCCGAAGATGCTTATGCTCCTTCAATTATAACTGAAAGACATTTACCGGAAATGTTACAAGACCAGATGGACCAACCGCTTATATCGTCAAGTTCAAGTCTCACCCCCTGTGTCTGA
- Protein Sequence
- MSGSKPRKRGSAWDEDSLRRAMEAVQNNQLNTNAAALKFNIPRRTLRNHLLSGNSSKIIGKTTVLTKQLEEDLAQRIKRFAKLGIPLTPTFIRKQAFLFCERFKIKHSFNMSTRMAGRKWLKMFLIRNPSISKTNPQLMIPVRAQKINKPVVKHYFEEVKKLYEELDIIAHPERLYNMDEKGCRITVHKENIVLTEKGNTRVHLVAEEHTENVTIAMCVNAVGNAIPPMIIFKGNRYRSELGLNLPHGTKVSMAPKGSMTSSLFIEFIQHFAQHKAPGKCLLIFDGAKCHLTYEALEEADKNNIVLYCFPSNTTQELQPLDKSVNLSFEHHWDEEVLNYLCNSQERTLNKVAFNKIFSRTWPKCITQTNITNGFKATGLYPFDPDVIPEDAYAPSIITERHLPEMLQDQMDQPLISSSSSLTPCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01538689; iTF_00722986; iTF_01178449; iTF_01178450; iTF_00159773; iTF_01533869; iTF_01534735;
- 90% Identity
- iTF_01538689;
- 80% Identity
- -