Ayam001810.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Antheraea yamamai
Gene Symbol
-
Assembly
None
Location
AY:410636-413925[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.049 2.3 8.6 0.1 1 23 175 198 175 198 0.95
2 10 0.42 20 5.6 0.2 2 20 202 220 201 222 0.91
3 10 0.96 45 4.5 4.5 1 23 226 249 226 249 0.94
4 10 0.00017 0.0079 16.3 1.8 1 23 252 274 252 274 0.96
5 10 0.0011 0.052 13.7 1.2 2 21 279 298 279 299 0.93
6 10 3.3e-05 0.0016 18.5 0.4 1 23 318 341 318 341 0.93
7 10 2.2e-06 0.0001 22.3 2.3 1 23 347 369 347 369 0.97
8 10 6.4e-06 0.0003 20.8 0.9 1 23 375 397 375 397 0.98
9 10 0.00088 0.042 14.1 1.0 1 23 403 426 403 426 0.95
10 10 3.7e-05 0.0018 18.4 1.8 2 23 432 453 431 454 0.94

Sequence Information

Coding Sequence
ATGTTTGCGTTCTTGAACGAAAAATTTATAAATTGCGCGGAGCTTTTGATATTTCTTTCCAAAACAATGATTGATGGATTGGATTTAATTTTACTTGTGTCAGATATTGTAAGCGAGAATAATTACAAACATTGCAGGTTATGTTTGAAGAGTATCGTTAATAATTTTGTGAAGTTCGAAGATACTCCGTCTTTGGATTCAGAAGAAAATCATTTAACAATGTCCGAGTTAATGCGAAAGTTTTTGGGTGATGAGATATGTCATGAGATTCCAGGTGTAGATGCAGTATGTGTAGATTGTGCTAGTAAAGTTCTGGAAGCAGCGAATTTCATAAAAAAATGTGAAAATTCAACATATATCTTGAACAACATCTTTGACAGTGTAGCGAAAACACTGAATGTTGATATTGATGTAACATCTGGTGGAGAATGTTTGTATATATTAGTATCAGAGCATGAATCTAAAACAATATTAGTTAAGAATGAAGAAAATGTAAATAATAAAAATAATTTAAATCAATTTTTTCCCTGTAATGATTGTGATGATGTATACAATGATATTAATGAAATGAAAGCTCATAGCCTCACGAGACATGGGAAACTCATTTGTAGAAACTGCTATGAGACATGTGCAAACGTTTCCGAGTTGAATGAACACGAAGAGAGCACTGTATGTTACAGGTGCCTTGATTGTAATGAATACAAATGTACTGAAGATAGTTTGAAAAACCATCAAGATATATGCCACAATATTCATGTCTGCAAAGAGTGTGGTAAATCATTCCAGGGTTTAAAAAAATTACAAAATCATGAAATCAAACATTCCTCAAAGAATGTATGTTCCAAGTGCGGTAAACATTACTCAACAAAGGAGTTTTACTTACGTCATGTAAAACTTTGCCTGAAGGATATGATAGACCCACACCCAATGAGAAGTAAGATAAAAAAGAACTATTTTTGTAATAAATGTGGGAAAGGTTATAGCACACCTGGTGGATTACGTGTTCACAATAGATTTGTACATGGAAATGCTAAACCACATGTGTGTCCACACTGTAACAAACAGTTTACTGCTCCAAGTTACCTAAGAGTCCATATGATAAAGCACACAGGAGAAAAGAATTTTCCATGTGAAATTTGTAAAAAAAAATTTGTTTCTAAAGAGGCTTTATTGTATCATACCAGGCGACACACTGGGGAAAAACCATACAGCTGCCACCTGTGTGATGAAAAGTTTGTTAATGCTTCAGCAAGGGCAGAACATATTAAATTCAAACATGTTGGCCCTACCCTCATTTGCGAGATCTGTTCTCGAAGGTTTGTCACACCAACATTTTTAAGGCAACATATCAAGAAACATCACGACCCAACAAATAAGTTGTTTACTGGAAGATGTCTTATACCGCCTAATGTTCCTGCAGAAGAAAATATTAGAGTTGGTATTATTGAGAAATAA
Protein Sequence
MFAFLNEKFINCAELLIFLSKTMIDGLDLILLVSDIVSENNYKHCRLCLKSIVNNFVKFEDTPSLDSEENHLTMSELMRKFLGDEICHEIPGVDAVCVDCASKVLEAANFIKKCENSTYILNNIFDSVAKTLNVDIDVTSGGECLYILVSEHESKTILVKNEENVNNKNNLNQFFPCNDCDDVYNDINEMKAHSLTRHGKLICRNCYETCANVSELNEHEESTVCYRCLDCNEYKCTEDSLKNHQDICHNIHVCKECGKSFQGLKKLQNHEIKHSSKNVCSKCGKHYSTKEFYLRHVKLCLKDMIDPHPMRSKIKKNYFCNKCGKGYSTPGGLRVHNRFVHGNAKPHVCPHCNKQFTAPSYLRVHMIKHTGEKNFPCEICKKKFVSKEALLYHTRRHTGEKPYSCHLCDEKFVNASARAEHIKFKHVGPTLICEICSRRFVTPTFLRQHIKKHHDPTNKLFTGRCLIPPNVPAEENIRVGIIEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01317613;
90% Identity
iTF_00113557;
80% Identity
-