Ayam004608.1
Basic Information
- Insect
- Antheraea yamamai
- Gene Symbol
- -
- Assembly
- None
- Location
- AY:897844-912906[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.022 1 9.7 0.7 2 23 207 229 206 229 0.93 2 12 9.7 4.6e+02 1.3 0.3 6 23 239 256 237 256 0.91 3 12 0.061 2.9 8.3 6.7 1 23 290 313 290 313 0.90 4 12 0.2 9.6 6.6 0.3 5 23 322 340 320 340 0.94 5 12 0.0012 0.055 13.7 0.7 1 23 346 368 346 368 0.97 6 12 0.00025 0.012 15.8 2.1 1 23 376 398 376 398 0.97 7 12 0.00011 0.0051 16.9 0.7 1 23 407 430 407 430 0.98 8 12 0.00022 0.01 16.0 0.2 1 23 436 458 436 458 0.97 9 12 1.6e-07 7.6e-06 25.8 1.7 1 23 464 486 464 486 0.98 10 12 0.00037 0.018 15.2 1.0 1 23 491 513 491 513 0.98 11 12 2.7e-06 0.00013 22.0 4.4 1 23 519 541 519 541 0.97 12 12 8.2e-05 0.0039 17.3 0.8 2 23 548 570 547 570 0.95
Sequence Information
- Coding Sequence
- ATGGATATGAATGTAAAGGATCTGTGCAGACTTTGTGCAAGTAAAGATGAGTTTTGTAAAGATATACTAGACGAAAACAATAAAAATATATTCAAATTGATAAAAGATTTCATACAAATTGTGGTATATGAAAATGATAAATTACCGACAAAGATATGTTTGAACTGTGAAGAGAAAATGGTAACTTTTCAATTATTTGTGTTGGAATGTTATAAAACTCAGGACACACTAAGAAAGTTGTATAAAGAAGTTGAAGCTTACAGTGATGTTGGAATAAAAACTGAGAATGCTGCAAATGGATTCACTGTTTCTCATTCTCATATTAAGTCAGAGGTCAAAGATGAAACAACAGGTGAAAATATTCAATGTGACCTTAACAATGATACTTCCTTATCGGAGTTATTTGGCTATGAGGATAATGACAACTTTCAAGAGGATCATGTTGATGTTGATAATGATGACGATGATGATGACTACCTAGATGACATTGCGATTGCATCCTTAAAAGATATTACAAAGAAAAAATTAAAAACGAAAGTTGTTATTGAAAAAGATTCTGAAGAGTTTAAAGAAATACTGAAACAACCAAATTTAAAAGTAAAAGATTTTGTCAAATTGGAATGTAGATATTGTGAAAACAAAGTGAAAACATGGAGTGCTTTACGATATCATTATTTTAAGGTACACAGGTCTAAACCTGTTGTGTTCTGTTTATGTGGTTTTGAAATAAGATCGAAAAGTGTTCTCTACAAACATGTATCAGATCACAAATTAGGAAGCAAAATATTAAAAATGGCAACTCTGGGAGAACAGGAGGATCAAGAAGATTCAAAGTATGATAGTTTAAATATTAAAGATTTCGTGAACTTTGTATGCACATCGTGCGAAAAAAAATGTTCCAGTTGGTACAGCCTAAGGACACATTGCCAAAGAACTCATAAAACCTTACCAGTTGTTAATTGTGTATGTGGCATAACACTCAAGTCGAAATCAGCTATGTACAAGCATGTAAAGGATCATAAAAATCCAAATGTTTTCGCTTGCGATAAATGTCCACGAATAACAACTACAATGACGGCGTTAAACAAGCACAAGATGCGACACGTACCAAAGTCAGAAAGGAAGTACTGTTGTGCGTCTTGCGACAAAATATTCAACTCTAAGGAGGCCTTGAAATCCCACGAAAAATCTCATATACCTATTGAAGAGAGGAAAATATATCGCTGTGACGTGTGTAACATGAAGTTCACAACACGGTCATCGGCCGCGTCTCACAAGCGCGTGGTGCACGAAAAGATCAAGGGGTATGTGTGCGACCTGTGCGGGTACGCGTGCGGGACCAACGGCGAACTGAGGCAGCACCGCGCTATACATAGCGACGATAAGCCTTTCGTCTGTGGGAAATGTAATAAACCATTTAAGACATATTCAAACCTGAAGACTCACATGGACACACATGAGGATACATCGTACGAGTGTTACATATGTCGGCGCGTGTTGAACAGCCGACGCACGCTTCGGAAGCACTTACTCGTGCACGAGGACAAGTGCAGGCATGTCTGCACTTACTGCAATAAAGCCTTCAAGAGAAGGCAGACGTTAAAGGTTCACATGTACACACATACTGGGGATAAGCCGCTGACGTGCAAATGGTGCGACGAGCGTTTCGCGTACGCGTCCACTTTGCGCTCGCACCGACTGCGTTTCCATCCGGACAAGATGGCGGCGCAAGGGCAAGACAACTACACGAATTACAACACACACGTTATGCCAGAGAATTACATAAAAGGCGATTCAGCGCCAACAAATGTAGTGGCGACTGTTGCAAAAAATGAAGTAGAAGCTATGTAG
- Protein Sequence
- MDMNVKDLCRLCASKDEFCKDILDENNKNIFKLIKDFIQIVVYENDKLPTKICLNCEEKMVTFQLFVLECYKTQDTLRKLYKEVEAYSDVGIKTENAANGFTVSHSHIKSEVKDETTGENIQCDLNNDTSLSELFGYEDNDNFQEDHVDVDNDDDDDDYLDDIAIASLKDITKKKLKTKVVIEKDSEEFKEILKQPNLKVKDFVKLECRYCENKVKTWSALRYHYFKVHRSKPVVFCLCGFEIRSKSVLYKHVSDHKLGSKILKMATLGEQEDQEDSKYDSLNIKDFVNFVCTSCEKKCSSWYSLRTHCQRTHKTLPVVNCVCGITLKSKSAMYKHVKDHKNPNVFACDKCPRITTTMTALNKHKMRHVPKSERKYCCASCDKIFNSKEALKSHEKSHIPIEERKIYRCDVCNMKFTTRSSAASHKRVVHEKIKGYVCDLCGYACGTNGELRQHRAIHSDDKPFVCGKCNKPFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCTYCNKAFKRRQTLKVHMYTHTGDKPLTCKWCDERFAYASTLRSHRLRFHPDKMAAQGQDNYTNYNTHVMPENYIKGDSAPTNVVATVAKNEVEAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00112711; iTF_01316616; iTF_01317557;
- 90% Identity
- iTF_01316616; iTF_01317557;
- 80% Identity
- -