Ayam013369.1
Basic Information
- Insect
- Antheraea yamamai
- Gene Symbol
- -
- Assembly
- None
- Location
- AY:17081-37285[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.086 4.1 7.8 0.2 2 14 206 218 205 222 0.87 2 16 0.00023 0.011 15.9 2.9 1 23 444 466 444 466 0.96 3 16 0.00021 0.01 16.0 0.1 5 23 513 532 512 532 0.94 4 16 0.00044 0.021 15.0 1.6 1 23 713 736 713 736 0.93 5 16 8.1e-06 0.00038 20.5 0.3 2 23 742 764 742 764 0.95 6 16 0.066 3.1 8.2 4.9 2 23 779 801 778 801 0.95 7 16 0.00073 0.034 14.3 3.2 1 23 811 834 811 834 0.98 8 16 0.024 1.1 9.5 1.6 6 23 845 863 843 863 0.95 9 16 0.00053 0.025 14.8 1.0 1 23 877 900 877 900 0.96 10 16 0.28 13 6.2 2.5 2 23 906 929 906 929 0.91 11 16 1.1e-05 0.00052 20.0 1.7 1 23 936 959 936 959 0.98 12 16 0.036 1.7 9.0 0.5 6 23 970 988 968 988 0.95 13 16 0.098 4.6 7.6 2.2 2 23 996 1018 995 1018 0.96 14 16 0.02 0.95 9.8 0.8 5 23 1028 1046 1026 1046 0.96 15 16 5.2e-05 0.0025 17.9 2.5 1 23 1058 1081 1058 1081 0.98 16 16 0.04 1.9 8.8 1.2 6 23 1092 1110 1090 1110 0.96
Sequence Information
- Coding Sequence
- ATGGACAGCAAGAAACATGTTATACCCAACTGTGATACAATTAGTACCACAACTCCAGAAACACAGGGGAACTTACTAATATGTATACCAACATTGAAACAAGAAACTGAGTGTATAAAGGAGGAAGAATCACTTTGCAGTGATTATATGTATCTTTCCGAACCCTTGAAGTCCTTAGAATATGTAAATTATTATGATAGTGGAGGTTATGTCTTGGAAACGGTAAAAAAGGAGCTCTATGAACATGAATTTCCTCTGACGGACAGCACTAGTAATAGTAACATAGTTTCTAAGAGTGAGAAATTATTAAACCCTATAGACAAACAAGAAGTAAAGTGTGAAAACACAGAGGAGGGATTATCATTAGAAATAAAGGAAGAAAATGACTATAAAAATCGCCAGTTTCCAATAAAAACGGAGAGACAAGAAGACCAAGGAATATTAGATTGTACGGAAAACACCAGAATATATAACAATTCGTTAAATATAGAGAACGAAGGTGGCAATATAGAATACCAAGTTACAGTAAAATCAGAGAGATTGGAGGACCAATCATTAGGTTATACGAAGGACATTAATGTACATTATGATATACAGCAAATTCCTCAAGAAGTTCAATGCAAGTTGTGCGATAAACCATTCAAGAATAGAATGGACAATAAAGCTGCTGAACATAGCCGCCTGTATAGAGAGCGACATAAAGAAGAAATCAATCAACGGAGAAGAGATAAAAGAAAAAAATCACAACTAATCCAAACCGTATCCAATATACAAAACATAAAGGAAACCGAACAAATAACTCAAGAAACATCAAATAATCGACCATTAAAATCAAAATCACATACACAGAGACAGCAAAGATACTATGAGAGGCATAAAGAATTGATAAACAAGCGTAGAAGAGATAGTAGATTGCAGCAAAAGAATCAAACGATTCCTGCCACCCCTGCTGAACGTAGTCTCATATGTATACTGCTGAGAATGAAAGATCTTGAAACGAAGAGAACTATGGACTGCAAGGAACTTATAGTACCCAGCCGCAACACATTGAATACCACACTCACACAAGTTATTCCGACAGTAAAACAAGAAATAGTTGAATGTAGAAATGAGGAGGAATCACCTTCCATTGATTATATGAATAAGGATCTATTAAAACATACAGAGGACCAAGAAATAAAACATGAAAACACTGAAGGGGAATTCTCGTTAGCTATAAAGGAAGAGGATGAGGACGTAGGTTACAAATATGAAATGAAAATGGAGGAACAAGAGCAAGGAATATTGAGAGATGTCAGAGACACAAAATCACATAAGGATGTGCAGGAATTTCAATGCAATTTGTGTCATAAAATATTTAAAGATAGTTTAAATCTGTTAAAACACAACAATGAACACATGAAAGTTGACACAAACTCTCCAGGGAAGAGTAAAATAAATAAATCTAACTATAGCCAGTCGGGCGACAAATATAGGTCTAATATCCCATTTGAACAAATTAATGGTGTGCACACTGAGATAGAAACAAAATATAAACTATGTGGAAAGGAATTCAAGAACGTTGCAAATTTAAATCGTCACATTATGGTTGGGCATAAACTTAAGAAATCACCAAAGAGAGTTATTGGAAATGGTGCCAATTTTTACCATATGAAGCTATCTCATTCTGGTTTGGAGGACGTAAAGCGAAATGAGAAGGATAGAGAACATTTACCATCTTCTTGTGATGGCTTAGAAACAATAACTGTAGAGACACAATTGGATTTAGAGATATCTACACTGGCAGTAAAAAAGGAAACAGTTGACTGCATTGATGAGGAAGAATCGCCTGCTAATGATTATGAGAATCAGGAATTATTGAAAGTTATAGAAAAACAAAAAGTAAAAAGCGAAGGAACGGATGACAAGGAGAAGAATAATTATGAGATTACAATAAAAATGGAAAAATCAGAAGAGGACGAAATATTGGATAATATTGGAGACACCAACACACATGATATGCTGATGGTTCCTCGACAAAGTCAATGTAATTCATCGGATAGGAATTGCAGAAAGAATTTCGACTCATTAGAGCCCAGTAATGAACACATAAAAGTCGAAATGATCACACCAGGAGTTAATCAATTAAACGAGTTATACCATTGCCAGTACTGCAACAAATATTTTGATGACTATAATAATTTGCTTGCACACATCAGTGATGTCCATAAGAACAGCAAACCGGAATGTGAATTATGTGGAAAGAAATTCAAGAATGAACTGAATCTTCAACGACACATCCTGATTTTACACAAAAACAAGAAATCTCCAAAGCATATTACTCCAAACAGTCTGAAATGTAAACATTGTAATGCGTATTTCAAATACGAACATAGATTGAATGAACATATCAAATTGTATCATCCTGATGGCGAAACTGTGAAAACGATGTACAAGTGTGAATTTTGTGAACGCTTTTATAAAAGAAAACAAACTTTGACACTGCATGTAAAGAAAATCCATAAAGATTATGGAAAGATGTTTGATTGCTGGTGCGGGGAAAAGTTCCGTTCTCCGATACACTTGTATATACATAAGAGGAGGAAGCACGAACCCAAGACTAGAAAGGTTAAAAGAAGAAAATCAGAATACAAATGCAAAAGATGCGAGGCGGTTTTTAAAGTTAAACAGGATTTAAGAGACCACACGAGGGGAACTCATTATAAGCATATTGAAAAGTGTAAATGTTGGTGCGGGAGACAGTTTTATTCGCGGATAAAGCTGTCCGCTCATGAAAGCTTGCGGCACTTTAGCAATAATGAGCAATTCCAATGCGACTCGTGCCAGAGGATCTTTAAAAGGAAAGCAAACTTAGTCAACCATATAAAGAGATTTCATTATGATTATGGGAGAATGTTTGAATGTTTCTGCGGGGAAAAATTCACGTCACCAATATATTTAAGTGAGCACAAGAGATCACAGCACGATCCAATTCACAATAGAATACGATGCGAGACTTGCCAGAAGATTTTGAAATGTAAATCTAGTTTAGTTCAACATATAAAAAGAGTTCATTATGATTATGGGAGATTATTTGAATGCTACTGCGGGAAACAGTTCCGTTCACCGCTATATTTAAGCCAACATAAGAAGTTGCACGAGCGGAAATCTCAGAATACGGACTCTGTTAAATTCCAATGTGACTCGTGCAAGAAGTTCTTTAAAAGGAAACCAGACTTACTCGTGCATATAAAGAAATTCCATTATGATTATGGGAGGCTGTTTGAATGTTTCTGCGGTGAACAGTTCACGTCACCAATATTCCTAAATCAGCACAGGAGGCGGCGACACAATATGAAGTTTGTAAATACGGAGATATCCCAATGTGCCAAAAGTTGTACCAAAGTAAAGTGTGTTTAG
- Protein Sequence
- MDSKKHVIPNCDTISTTTPETQGNLLICIPTLKQETECIKEEESLCSDYMYLSEPLKSLEYVNYYDSGGYVLETVKKELYEHEFPLTDSTSNSNIVSKSEKLLNPIDKQEVKCENTEEGLSLEIKEENDYKNRQFPIKTERQEDQGILDCTENTRIYNNSLNIENEGGNIEYQVTVKSERLEDQSLGYTKDINVHYDIQQIPQEVQCKLCDKPFKNRMDNKAAEHSRLYRERHKEEINQRRRDKRKKSQLIQTVSNIQNIKETEQITQETSNNRPLKSKSHTQRQQRYYERHKELINKRRRDSRLQQKNQTIPATPAERSLICILLRMKDLETKRTMDCKELIVPSRNTLNTTLTQVIPTVKQEIVECRNEEESPSIDYMNKDLLKHTEDQEIKHENTEGEFSLAIKEEDEDVGYKYEMKMEEQEQGILRDVRDTKSHKDVQEFQCNLCHKIFKDSLNLLKHNNEHMKVDTNSPGKSKINKSNYSQSGDKYRSNIPFEQINGVHTEIETKYKLCGKEFKNVANLNRHIMVGHKLKKSPKRVIGNGANFYHMKLSHSGLEDVKRNEKDREHLPSSCDGLETITVETQLDLEISTLAVKKETVDCIDEEESPANDYENQELLKVIEKQKVKSEGTDDKEKNNYEITIKMEKSEEDEILDNIGDTNTHDMLMVPRQSQCNSSDRNCRKNFDSLEPSNEHIKVEMITPGVNQLNELYHCQYCNKYFDDYNNLLAHISDVHKNSKPECELCGKKFKNELNLQRHILILHKNKKSPKHITPNSLKCKHCNAYFKYEHRLNEHIKLYHPDGETVKTMYKCEFCERFYKRKQTLTLHVKKIHKDYGKMFDCWCGEKFRSPIHLYIHKRRKHEPKTRKVKRRKSEYKCKRCEAVFKVKQDLRDHTRGTHYKHIEKCKCWCGRQFYSRIKLSAHESLRHFSNNEQFQCDSCQRIFKRKANLVNHIKRFHYDYGRMFECFCGEKFTSPIYLSEHKRSQHDPIHNRIRCETCQKILKCKSSLVQHIKRVHYDYGRLFECYCGKQFRSPLYLSQHKKLHERKSQNTDSVKFQCDSCKKFFKRKPDLLVHIKKFHYDYGRLFECFCGEQFTSPIFLNQHRRRRHNMKFVNTEISQCAKSCTKVKCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -