Ayam007327.1
Basic Information
- Insect
- Antheraea yamamai
- Gene Symbol
- -
- Assembly
- None
- Location
- AY:503938-506193[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0076 0.36 11.1 1.1 1 23 38 60 38 60 0.96 2 18 0.044 2.1 8.7 0.0 2 23 89 111 88 111 0.93 3 18 0.0085 0.4 11.0 0.1 2 23 132 154 131 154 0.94 4 18 1.5e-05 0.0007 19.6 1.0 2 23 160 182 159 182 0.95 5 18 0.0017 0.078 13.2 1.1 1 23 187 210 187 210 0.95 6 18 0.94 45 4.5 0.1 2 23 213 235 212 235 0.94 7 18 0.0018 0.087 13.0 1.3 2 22 242 262 241 262 0.93 8 18 0.0035 0.17 12.2 0.6 1 23 322 345 322 345 0.93 9 18 0.12 5.5 7.4 0.1 3 23 374 395 372 395 0.91 10 18 0.0035 0.17 12.2 0.6 1 23 441 464 441 464 0.93 11 18 0.52 25 5.3 0.0 3 23 493 514 491 514 0.92 12 18 0.05 2.4 8.5 0.2 3 23 538 560 536 560 0.94 13 18 0.00039 0.018 15.2 0.4 3 20 567 584 565 588 0.90 14 18 0.0089 0.42 10.9 0.4 1 23 593 616 593 616 0.97 15 18 0.00038 0.018 15.2 0.3 2 23 622 644 622 644 0.92 16 18 0.0001 0.0049 17.0 4.7 1 23 648 671 648 671 0.97 17 18 0.00036 0.017 15.3 0.6 2 23 678 699 677 699 0.96 18 18 0.014 0.65 10.3 1.9 1 23 705 727 705 727 0.96
Sequence Information
- Coding Sequence
- ATGAAACAAAGGAAATATAAAGGATGTGAATCGTCCTCGATGAGGAGGCGAAAGAATCTTCAGATCCTCTTCAACAATACGTCGATCATACCGTTTAAGTGGCGAGGGAAGTACCTCTGCTTTTACTGCAGTAAGGATGTCGCCGAATATTCGGAACTTAGAAAGCATACGAAGTCACACGGTAGCTGCTCTACTAAAGACCATTCCCTGAAGGTTCTCAAGGGAGGTCAGAATATGGAAATCAAAATCGACGTATCGGATATCACTTGTGAGATCTGCAGTGAACCGTTTCCAACTTTCGACGAAATTTTAAACCATCTATACGTAAAACACAAGCTGGAATATGATAGAGGTGTCGAGATGGCTATCGAGGAATACAGGCTCGTCGATCTGACATGTCTGGTCTGTGGTGAACGATTCGCGTACTTCGGTTACCTAGTATCGCACGTGAACAACACACATCCAAAGAATTGTATCGTTTGCGACGACTGCGGTCAGAAGTTTAACAAGAAACGTGATCTGTTCTCCCATATGAAGAACTATCACCGGGAAGGCGGTTACCAGTGCGAGATGTGCCCACAGAGCTTCACCTCGCTCAACATCCTTAGGAAGCATAGGAGTAACCGCCATCTGACCAGATGCGGGATCTGTCAACTCAAGCTCCCATCGGCCGCTTTGAAACAGAAGCATATCGATATAGAACATCCCGATGATGGTTCGCTCCAATGCGACAATTGCGATAAACAGTTCCATACGAAACAAGGACTCAGGATGCATGCCAGAAAGTGCAAAGGCGATGGGGATTTCTTCGACATCCCTTTCAAAAAGGAAGACTACACGATGGACTTGGATCAAAATTACGAGGAACTTTCCAAAAGACCGAGCGTGAAGCAAATCAGAGAGAACATAGTTATCGTTATAAACATGTCGACAGCTATACCTTTCAATTTTTACAAGAATAAATTCAACTGCTTTTATTGCTCCAAGGACTTTCCCGATTCTGATACGATGCGAGAACACACTGTCATGGAGCATCCTGTCTGCGATGTGAAGCAGAAGTGCATACGGAAGTGTAGAGAGTCGGTCGCTTGCGTCAAAATCGATATCTCGTCCTTAGCTTGCAAGATTTGTTTCGAATCGATGTCCGATTTGGATAATCTTCTCGATCATCTTATAGGGAAACACGAAGCGAATTACGATAAATCGATTACCACCTGTCTCCAACCTTACAGATTGATAAAAGACCATATGGCTTGCCCTAACTGCCCTGGCGAGGCTTTTAGGTTCTTTGCTATACCTTTCAATTTTTACAAGAATAAATTCAACTGCTTTTATTGCTCCAAGGACTTTCCCGATTCTGATACGATGCGAGAACACACTGTCATGGAGCATCCTGTCTGCGATGTGAAGCAGAAGTGCATACGGAAGTGTAGAGAGTCGGTCGCTTGCGTCAAAATCGATATCTCGTCCTTAGCTTGCAAGATTTGTTTCGAATCGATGCCCGATTTGGAGAATCTTCTCGATCATCTTATAGAGAAACACGAAGCGAATTACGATAAATCGATTACCACCTGTCTCCAACCTTACAGATTGATAAAAGACCATATGGCTTGCCCTAACTGCCCTGGCGAGGCCTTTAGGTTCTTTGGTACCTTACTGAAACACATGAACAAAAAACACACGAACAATAATATCATATGCGTGTACTGCGGAGAAACGTTCAGGAGAGATCAGAACTTGAGAGTTCATATCTGGCGTCACCATAGAGACGGTCGATTCAAATGTACCATATGCGGTGCCGAGTGCAATATACCGTCTAGATTGTACATGCATATGGCGAAAGCGCACGGCGTTAGAGCGGCGAAATGCCCTAAATGCCCGGAGAGTTTTGCGACACAGTACCTAAGGCAGAAGCATTTGATAGACGTCCACGATTCGGGCCACAAGTGCTCGTATTGTGGGAAACTGTTTACGAGGAATTCTTTCATGCGTGATCACGTAAGACGGACACATCTGAAGGAAAAGAACGTCGAATGCTCGATTTGCAGTATGAAGTTTTTCAATAACATCCTCTTGAGAAGGCATATGGTCAAACACAGCGGTGAGAAGAATTTCCACTGCGAAGTCTGTGGCGAGAGATTCTTCTGGAGGAAGAGCTTGCGAACTCATATCGTTAGGCATAATAAGCATCTCGGTGCAGCGCAGATGTAG
- Protein Sequence
- MKQRKYKGCESSSMRRRKNLQILFNNTSIIPFKWRGKYLCFYCSKDVAEYSELRKHTKSHGSCSTKDHSLKVLKGGQNMEIKIDVSDITCEICSEPFPTFDEILNHLYVKHKLEYDRGVEMAIEEYRLVDLTCLVCGERFAYFGYLVSHVNNTHPKNCIVCDDCGQKFNKKRDLFSHMKNYHREGGYQCEMCPQSFTSLNILRKHRSNRHLTRCGICQLKLPSAALKQKHIDIEHPDDGSLQCDNCDKQFHTKQGLRMHARKCKGDGDFFDIPFKKEDYTMDLDQNYEELSKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDTMREHTVMEHPVCDVKQKCIRKCRESVACVKIDISSLACKICFESMSDLDNLLDHLIGKHEANYDKSITTCLQPYRLIKDHMACPNCPGEAFRFFAIPFNFYKNKFNCFYCSKDFPDSDTMREHTVMEHPVCDVKQKCIRKCRESVACVKIDISSLACKICFESMPDLENLLDHLIEKHEANYDKSITTCLQPYRLIKDHMACPNCPGEAFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCTICGAECNIPSRLYMHMAKAHGVRAAKCPKCPESFATQYLRQKHLIDVHDSGHKCSYCGKLFTRNSFMRDHVRRTHLKEKNVECSICSMKFFNNILLRRHMVKHSGEKNFHCEVCGERFFWRKSLRTHIVRHNKHLGAAQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -