Ayam007309.1
Basic Information
- Insect
- Antheraea yamamai
- Gene Symbol
- -
- Assembly
- None
- Location
- AY:530884-536168[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.02 0.95 9.8 2.6 1 23 57 80 57 80 0.98 2 21 0.039 1.9 8.9 0.1 2 23 106 128 105 128 0.90 3 21 3.1 1.5e+02 2.9 2.8 3 16 153 166 151 174 0.74 4 21 0.00097 0.046 13.9 0.0 1 23 180 203 180 203 0.96 5 21 0.019 0.89 9.9 3.0 2 19 209 226 208 231 0.91 6 21 1.9 88 3.6 2.2 1 21 236 256 236 259 0.75 7 21 1.7e-05 0.00078 19.5 0.7 1 23 266 289 266 289 0.97 8 21 0.014 0.66 10.3 4.6 2 23 296 317 295 317 0.93 9 21 1.9 88 3.6 2.2 1 21 332 352 332 355 0.75 10 21 1.7e-05 0.00078 19.5 0.7 1 23 362 385 362 385 0.97 11 21 0.014 0.66 10.3 4.6 2 23 392 413 391 413 0.93 12 21 0.05 2.4 8.5 7.1 1 23 467 490 467 490 0.95 13 21 0.49 23 5.4 0.1 2 23 516 538 515 538 0.92 14 21 0.04 1.9 8.8 4.2 2 23 561 583 560 583 0.94 15 21 0.0029 0.14 12.4 0.1 1 23 587 610 587 610 0.94 16 21 0.007 0.33 11.2 0.3 2 23 616 638 615 638 0.89 17 21 0.0044 0.21 11.8 1.0 1 23 642 665 642 665 0.96 18 21 0.00027 0.013 15.7 4.1 1 23 672 695 672 695 0.96 19 21 0.00028 0.013 15.6 0.5 2 23 702 723 701 723 0.96 20 21 4.1e-05 0.0019 18.3 3.0 1 23 729 751 729 751 0.98 21 21 9.2e-06 0.00043 20.3 0.5 1 23 757 779 757 780 0.95
Sequence Information
- Coding Sequence
- ATGGCTCCCTACGCCCGCTCGTTCCATAGTGTACAAGACAACAAGAGAAACCATAAGAGATCAGAGTTGACAACGGGTAAGACCCGTGACAAAATCGAGATTAGGAAATTCGTCAGCGTGGTGCTAGAACTGACAACAATAATGCCATTCAAATGGTTTCACAATCGGTACATGTGTTTCTACTGTCGTATGACGTTTCTAGAAAGCTCTAAACTGAAGGAGCATACGAGAACGATGCACCAGGACGTTAAAATGAAGAGTGTACTTAAAGGAATCGGATCGTATAGTAGAATTAAATGGGATATTTCCGATCTAAGGTGCAAGATATGTCCCAAATCGTTGTCAAGCCTAAATGAAGTCGCAGACCACGCTGCAAAATCCCACGATCTCTTCGTAGACATGCATGTGATAGACAAATGCTGCTATGTCTTCCGTTTGTCGGACGATGTAATGCACTGCACGGAGTGTGGGGAAATGTTCAAATTCTTCACACCTCTACTATGTCATGCAAATAAGTACCATAATAAAAGTAAGCGATACGTTTGCGATTTATGCGGCAAAGGCTTCGCAATCAAAGGCACGATTATAAGTCACATGCAAAACGTTCATTCGGTTATCGCGAATAAATGTACGGTGTGCAGGACGTCGTTTCCGACGCGTCACGCGTTGACGAATCATTGCGAAGTCGTCCATAAAGTTGGTAAATTCAATTGCCCGATATGTTCAGAGGCTTTCGGGAGTAGTTATAGGAAGAAATGCCATCTCGCGACGTTCCACGACGTGAAAAGTTACCAGTTTAAATGCGATCTATGCGGGAAGGTTTACCCGGACAAGAGTAAAATGCTGCGGCACAGGTCGAGGGCGCACTTGAAGGAGAAGTCAGTGACTTGTCACAAATGTGGGCACAAAGCGTTTGACATGTCCACTTTGAAACGTCACATGTATAGTCATGAAGATGTGAGACCTTTCCATTTCGTCCATAAAGTTGGTAAATTCAATTGCCCGATATGTTCAGAGGCTTTCGGGAGTAGTTATAGGAAGAAATGCCATCTCGCGACGTTTCACGACGTGAAAAGTTACCAGTTTAAATGCGATCTATGCGGGAAGGTTTACCCGGACAAGAGTAAAATGCTGCGGCACAGGTCGAGGGCGCACTTGAAGGAGAAGTCAGTGACTTGTCACAAATGTGGGCACAAAGCGTTTGACATGTCCACTTTGAAACGTCACATGTATAGTCATGAAGATGTGAGACCTTTCCATTGCGATCAAAACCAGTCGATTACAATTGAAGATATATCAGAGAGAGATAGAAGAGAGCGTAAAGTCGAGTTGACTAGACTGCTTATTGCGATCCTTGAGAATTCAACAATAATACCATTTAGATGGCATTCGAACAAGTTTATGTGTTTTTACTGCTCTTGCTGTTTCTTTGAAAGCTCAAAACTTAAGGAGCACATGAAAGACGAACACCGAAAGGTCAAAATCACGAAAGATGTACGCAAATTGCTAACTTCCTGCCGAATAAAGTTGGACGTGTCAGATATATATTGCAAGCTATGCCCAAAAAAACTCCAAAGCTTCGAAGGATTTTTGGCTCACATATCTGAAGCTCACGATTTAGCCTTTAATAAAGATATCACCACGTGTATATATAGGTTTAAATTAAACGACGGGCTCATGTCGTGCTGCGACTGCGACGCGACTTTCAGGTTCTTTGGTTCCCTGATGAAACACGTTCACAGATACCATAACAGAGACTTCCTTTGCGAGGTATGCGGGGAAGGTTTTATTGGTAAACGCGACGTCGAAAGCCACATACGGAATAAACACGTTCTAAACCCGATACCTTGTAGCCAATGTGAAAGTACCTTTCCGAGTGCGAGCTCTTTGAGACACCACAACGATATCGTCCATAAAAACACCTTCAAGTGCCCAAAATGTCCGGAAGTGTTGAAGAGTAAGTTTTCAAAGCGTCAACATTTGGCAAAGATGCATGACGTGAAATGTCTCCGGTTTACCTGTGACCAGTGCTCGCAAGTATTTACGAGGAATAGTACCTTGGTCCATCATAAATCAAGGTTCCACTTGAAGGAGAAGAAAGTGACTTGCGAGATCTGCGGGTTCAGAGTTTTCAACAATCAGTTACTGAAACGTCATATGATAAAGCACGACGGTTCGCGGCCGTTTGAATGTGAGTTTTGTAAGAAAACCTTTCAGAGGAAGAAAACCCTGGAGTTACACACGCGTATACACACGGACGATAGGAGATACGCGTGTAAGGTCTGCGGGAAGGCGTTTGTCCAAGTCACAAGCTTGAAAGTGCACTTGAAGGCTCATCACGCATCTAAGAACAATTCTATACTTACTTTGAATGAATAA
- Protein Sequence
- MAPYARSFHSVQDNKRNHKRSELTTGKTRDKIEIRKFVSVVLELTTIMPFKWFHNRYMCFYCRMTFLESSKLKEHTRTMHQDVKMKSVLKGIGSYSRIKWDISDLRCKICPKSLSSLNEVADHAAKSHDLFVDMHVIDKCCYVFRLSDDVMHCTECGEMFKFFTPLLCHANKYHNKSKRYVCDLCGKGFAIKGTIISHMQNVHSVIANKCTVCRTSFPTRHALTNHCEVVHKVGKFNCPICSEAFGSSYRKKCHLATFHDVKSYQFKCDLCGKVYPDKSKMLRHRSRAHLKEKSVTCHKCGHKAFDMSTLKRHMYSHEDVRPFHFVHKVGKFNCPICSEAFGSSYRKKCHLATFHDVKSYQFKCDLCGKVYPDKSKMLRHRSRAHLKEKSVTCHKCGHKAFDMSTLKRHMYSHEDVRPFHCDQNQSITIEDISERDRRERKVELTRLLIAILENSTIIPFRWHSNKFMCFYCSCCFFESSKLKEHMKDEHRKVKITKDVRKLLTSCRIKLDVSDIYCKLCPKKLQSFEGFLAHISEAHDLAFNKDITTCIYRFKLNDGLMSCCDCDATFRFFGSLMKHVHRYHNRDFLCEVCGEGFIGKRDVESHIRNKHVLNPIPCSQCESTFPSASSLRHHNDIVHKNTFKCPKCPEVLKSKFSKRQHLAKMHDVKCLRFTCDQCSQVFTRNSTLVHHKSRFHLKEKKVTCEICGFRVFNNQLLKRHMIKHDGSRPFECEFCKKTFQRKKTLELHTRIHTDDRRYACKVCGKAFVQVTSLKVHLKAHHASKNNSILTLNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -