Ayam007289.1
Basic Information
- Insect
- Antheraea yamamai
- Gene Symbol
- -
- Assembly
- None
- Location
- AY:557150-576744[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0049 0.23 11.7 0.2 1 20 130 149 130 151 0.95 2 19 0.53 25 5.3 0.2 2 23 179 201 178 201 0.91 3 19 2.6 1.2e+02 3.1 3.3 1 23 224 246 224 246 0.96 4 19 0.0011 0.05 13.8 0.8 1 23 250 272 250 272 0.98 5 19 0.0011 0.052 13.8 1.0 1 23 277 300 277 300 0.92 6 19 0.0019 0.09 13.0 0.7 2 23 308 330 307 330 0.93 7 19 0.00041 0.019 15.1 6.1 1 23 337 359 337 360 0.95 8 19 0.0071 0.34 11.2 1.6 1 23 366 388 366 388 0.97 9 19 2.4e-06 0.00011 22.1 2.0 2 23 395 416 394 416 0.96 10 19 0.00011 0.005 17.0 3.6 1 22 422 443 422 443 0.96 11 19 0.00049 0.023 14.9 0.9 1 23 504 527 504 527 0.92 12 19 0.5 24 5.4 0.1 2 22 553 573 552 575 0.88 13 19 0.0049 0.23 11.7 2.5 3 23 600 620 598 620 0.96 14 19 0.00029 0.014 15.6 0.3 1 23 624 646 624 646 0.97 15 19 0.0064 0.3 11.4 0.1 1 23 653 676 653 676 0.97 16 19 0.0022 0.11 12.8 1.0 2 23 684 706 683 706 0.94 17 19 5.9e-06 0.00028 20.9 0.6 2 23 712 734 711 734 0.97 18 19 1.2 55 4.2 1.0 1 23 740 763 740 763 0.89 19 19 1.2e-05 0.00058 19.9 1.7 1 23 769 792 769 792 0.98
Sequence Information
- Coding Sequence
- ATGTTGTCATGTTTAGCGACAGTCGTCAAGGTGGAAATGCAAGATGAAAACAACCAATCAGATGACAATATATCGTTAGACGATGGTTTTTCTGGACCCGAGTTTGATATGCCTATTAAAAAAGAGGGTACTGAGGACTCGAAACCTAAGAAACGTGCAGCAGCCGCTAAAGCGAGCACTTCCCGTGCCAAGAAGTCAAAAGCTAACGATGAATCCGCCGACACCAGCACAACTAAACGAACGGATGGGGGCACGCCAAAGCGCAGGAAAAAGAAAAAGAAATCTGACGAAAGCGCCACACCGGAGCGCGTAGAGCACAGGGTCAACCTGACAGCCATCCTACAGTACTCCAACGCGAGCCCGTTCAGGGATAAAACCATTCGGGGTTTCTCCTGTTTATACTGCGCGAAGGCCTTCCCCACTATTGACGAACTGCGTCATCACACCGCTCAGCAAACCGAAAAGGACAAAATCAACACGATAATCGATTATAAACTCAGTTACAATCCGATAAAAGTCGATATAACGAATCTACACTGCACCGTGTGCAATCTCGCCATGAAAGATCTAAACGAACTCAAGGATCATTTGATAGCGGTTCATAATAAAACTATATACAAACACATAAAAGACATCATTCTCCCCTTTCGTCTAGACGACGGTAATAACTTCACGTGTGTCGTGTGTTCCGTGGTGCATATATCGTTTAAGAATTTATACCATCACATGAGCAGCCATTACAGGAATTATTGCTGTAAGAAGTGCGGTGCGGGTTATATAACGATAGCGGCTTTGAGGAAGCACGGGAAGACCCACGCTCAAGGGATATTCCCTTGCGAGTATTGTGGTAAAACTTACACTTCATTGACGAAGAAGCGTAACCACGAGAAGGGAGTGCACGAAGGCGGTTGGTTGAGGAACAAATGCCCGCACTGCCCTAAAGTGTTCGTCAGTTATTACGACCGAAGCGAGCATCTGGTTAAAGTGCACAACGAGACGCCGATTATATACCCGTGTAACGCGTGCAACAAGACTTACAAGAAGAAGTTTGAACTGAACCGCCATATCAAACACCACCACTTGCAGCAGAAGAGCTTCTTCTGCGACAAGTGTAACGCGAAATTCTTCTCAAAGCGTGGCCTTGTCGACCATCTGTCCAGGCACGACGGCGTCGAGATGTGCTCATGCGACGTTTGCGGCAAGGCTTTCTCTCGTCTCCGGACCTTGAAAGAGCACTTAAGGATGCACGAAGACGACAAGAGATATCAATGCGAGATCTGCAAAAAGACCTTCATGCAGAAGTGTAGCCTAAAGAGCCACGTACGCAAGAGGGGTGCGGCTAAAAAACGAAAACGCGCCGTAAAGGAGGAATTGGAGGACCAGGAAACCCTCAGTAAATACGTTTACCGCGAAAAACATATACCGGAAGCGAAGAAACAGTGGCACAATTTGACCACGTTACTCAAATATTCGAACGCGACGCCATTTAAAGATAGAAACGACGCGGGCTATATATGCGCTTACTGTTTCAAGACTTACCCGGACCCTGCAACGCTGAGGCGACATACGCACGACGACCACGATAAAGAGAAACCTTCATACAAGGCCGGTTCAGGGATGGCCAGTTTCGTAGCGTTTCTGGACGTCGTAGACCTCAGATGCACGATATGTCACCAACCTATGGCCGATTTGAAAGCGTTAACCGAGCATCTTGTCGCGGATCACAACAAGAAGTACTATTTGGGCGCCACTGATTACTTCCAACCGTTCAAGCTTACGAACGAACAGCAGATCAACTGCTGCCTCTGCGACGAGGTCTTCCACAACATGAAGCTCTTAATGCAGCACATGAACGTTCACTACAGGAATTTCATTTGCACGATATGCGGAGCTGGATTTGTGAACAGTTTTCGCTTGAACCGACATGAGACAACGCATGGGAAGAAGAAGACCAGTTACCCTTGTCGGCAGTGCGGTCAGGTCTTCGCTGCTGAATCAAAGAAGAAGGCTCATGTTAACACGGAACATAAGGGTATAGCAGGCGATAGTGTGTGCCAGATATGCAAGGCGAGGTTCAAGAATTACTACCAGAAGACCAGGCACATGATCCAAGTTCACAACGCTGAGGGAATAAAATGCGACATGTGCGAGAAACGATTCAATTTGAAATCGAATCTCGTGCTGCATATGCGCAGTGTCCATCTAAAGGAGCGTCCTTATGAGTGTTCCGTTTGCAGTATGGGATTCTTCATCAAACGCCACATGTTGGGACATTATATGGCGACGCATACGAACGAGAGGAAGTTCAAGTGCGAAGTGTGCGGTAAAGCGTACGCAACGCAGAACAGCAAGAGGAAGCACATGAAGAAGAACCATGGGATCTCGAAGGGTTCTGTTATGATGCCGGTAGTGAAGTGA
- Protein Sequence
- MLSCLATVVKVEMQDENNQSDDNISLDDGFSGPEFDMPIKKEGTEDSKPKKRAAAAKASTSRAKKSKANDESADTSTTKRTDGGTPKRRKKKKKSDESATPERVEHRVNLTAILQYSNASPFRDKTIRGFSCLYCAKAFPTIDELRHHTAQQTEKDKINTIIDYKLSYNPIKVDITNLHCTVCNLAMKDLNELKDHLIAVHNKTIYKHIKDIILPFRLDDGNNFTCVVCSVVHISFKNLYHHMSSHYRNYCCKKCGAGYITIAALRKHGKTHAQGIFPCEYCGKTYTSLTKKRNHEKGVHEGGWLRNKCPHCPKVFVSYYDRSEHLVKVHNETPIIYPCNACNKTYKKKFELNRHIKHHHLQQKSFFCDKCNAKFFSKRGLVDHLSRHDGVEMCSCDVCGKAFSRLRTLKEHLRMHEDDKRYQCEICKKTFMQKCSLKSHVRKRGAAKKRKRAVKEELEDQETLSKYVYREKHIPEAKKQWHNLTTLLKYSNATPFKDRNDAGYICAYCFKTYPDPATLRRHTHDDHDKEKPSYKAGSGMASFVAFLDVVDLRCTICHQPMADLKALTEHLVADHNKKYYLGATDYFQPFKLTNEQQINCCLCDEVFHNMKLLMQHMNVHYRNFICTICGAGFVNSFRLNRHETTHGKKKTSYPCRQCGQVFAAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMIQVHNAEGIKCDMCEKRFNLKSNLVLHMRSVHLKERPYECSVCSMGFFIKRHMLGHYMATHTNERKFKCEVCGKAYATQNSKRKHMKKNHGISKGSVMMPVVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -