Ayam009710.1
Basic Information
- Insect
- Antheraea yamamai
- Gene Symbol
- -
- Assembly
- None
- Location
- AY:134720-162529[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 3.1e-05 0.0015 18.6 0.7 1 23 3 26 3 26 0.97 2 20 0.061 2.9 8.3 0.6 6 23 37 54 34 55 0.91 3 20 8.1e-05 0.0038 17.3 1.6 1 23 67 90 67 90 0.97 4 20 0.0084 0.4 11.0 1.5 5 23 100 118 98 118 0.94 5 20 3.7e-05 0.0018 18.4 3.5 1 23 135 158 135 158 0.97 6 20 0.044 2.1 8.7 1.7 6 23 169 187 167 187 0.95 7 20 2.7e-06 0.00013 21.9 2.5 1 23 203 226 203 226 0.97 8 20 0.072 3.4 8.0 0.2 5 23 236 255 234 255 0.94 9 20 8.5e-07 4e-05 23.5 0.6 1 23 271 294 271 294 0.97 10 20 0.0034 0.16 12.2 1.3 5 23 304 323 302 323 0.93 11 20 1.7e-06 8.2e-05 22.6 2.6 1 23 333 355 333 355 0.98 12 20 0.018 0.83 10.0 2.0 5 23 365 384 363 384 0.93 13 20 2e-05 0.00095 19.2 3.2 1 23 400 423 400 423 0.98 14 20 5 2.3e+02 2.3 0.1 13 23 437 447 434 447 0.87 15 20 0.018 0.83 10.0 2.0 5 23 457 476 455 476 0.93 16 20 2e-05 0.00095 19.2 3.2 1 23 492 515 492 515 0.98 17 20 0.0054 0.26 11.6 2.5 5 23 525 543 523 543 0.95 18 20 9.7e-05 0.0046 17.1 3.2 1 23 558 581 558 581 0.97 19 20 0.011 0.54 10.6 0.2 6 21 585 600 583 601 0.92 20 20 0.004 0.19 12.0 4.2 1 23 614 637 614 637 0.98
Sequence Information
- Coding Sequence
- ATGACATACAAATGTGAGTCATGTGACCGCATTTATAAAAGACAAGGTTTTTTACGAATACACATGGAGAGGATTCACGGTGACTATGGAAGAGTATTTCCATGTCGGTGTGGGGAACAGTTCACATCACCGGTACAGTTAAATTTACATAACGATAAGCACCACAGATCAAGTATTACGAATGAGCGCTGCAACGGATTTCAATGTGACTACTGCCTGAAAATTTTCAAAGTCAAAGCTAAATTAGCAAAACATATAAAATATTTTCATTACGATTATGGTAAAACATTTGAATGTTGGTGCGGGAAACAGTTCTCAACGCCGATGCACTTATCCACACATAAGAGTTACCATAATAAACTGAAAGTTAGAAATGGAAATAAGCCAACATTAAAAACCAAATTCGAATGTGATATATGTCACAAGTCGTTAAAAAAACAAAAATATTTGAACTTGCATATGAGAAATAGTCACTATGATAATAGTAAATTGTTCGTATGTTGGTGCGGGCAACGATTCCCTACACTGATAAATCTATGTTCGCATAAGAAAAGGCAACATGGGCCCAATGGTGGTAATGCAATTAATTCACCAATAAAAACACAATTCCAATGTGATATTTGTAAGAAAATGTTCAAAACAAAAGCATGTCTAAAAGCACACATAACAAGTGTCCACTATGAAAAAGGTAAAATCTTTGAATGTAAGTGCGGGAAACAATTCCCTACGCCAACAGGCCTATACGGACATAGGATTCGGCAACATGGCGGCATAATTAAAAATGGAATTAATGCAGCAACAAGAGCACAATTCCAATGTGATATTTGTCAGAAAGTTTTCAAAAGAAAAATATATTTGATAGTACACATGACAAGTATTCATTATGATTATGGTAAAACATTTGAATGTTGGTGCGGGAAACAGTTCCGTTCACCGGTTCACTTACGTGAACATAAGTCTAGGCTCCATAACATCAAAAGTAAGAATAATGACAGATTTCAATGTGATATTTGTCAGAAAATTTTCAAACATAAAATGTATTTAACAATACATATGAATATTCATAATGATTATGGGAAATTATTTGAATGTTGGTGCGGGAAACAGTTCTCTAAGTCAATACAGCTACATAGACATAAGATTCGGCTACACGGTGTCAGAGTTGAAAATGAAAACGATGCATCGTTACAGACACAATTCCAATGTGACTTTTGTCATAAAATTTTTAAATTAAAAGACTATTTAATAAAACATATAAAAAGTATTCATTATGATTATGGGAAATCATTTGAATGTTGGTGCGGGAAAAAGTNGTATTTAACAATACATATGAATATTCATAATGATTATGGGAAATTATTTGAATGTTGGTGCGGGAAACAGTTCTCTAAGTCAATACAGCTACATAGACATAAGATTCGGCTACACGGTGTCAGAGTTGAAAATGAAAACGATGCATCGTTACAGACACAATTCCAATGTGACTTTTGTCATAAAATTTTTAAATTAAAAGACTATTTAATAAAACATATAAAAAGTATTCATTATGATTATGGGAAATCATTTGAATGTTGGTGCGGGAAAAAGTTCTCCACACCAATGTACCTACATAAGCATAAGACGCGGCATATCGATGCTAAAGTTGAAAATGGAAGTAATGCCGAACACCAATTCCAATGTCATATTTGTCATAAAATTTTGACAAGAAGCAAATATTTAGCCGAACACATAAAGAATGTACATGAGTGTTGGTGCGGGAAACAGTTCAGTACACCTGAATGTTTAAGAATACACGAGAGGGAGTACAATTGTAAGCATAACAGTGAAAACAACAATAAGTATAAATGTGAATGTTGTGGCTCAATCTTTAAAGTGCAGAGGTATTTGACTAAGCATATGAAAAGAATGCATTGGGAACAGTCAGTGGTGGAAGAGATCAATATAGCGTAA
- Protein Sequence
- MTYKCESCDRIYKRQGFLRIHMERIHGDYGRVFPCRCGEQFTSPVQLNLHNDKHHRSSITNERCNGFQCDYCLKIFKVKAKLAKHIKYFHYDYGKTFECWCGKQFSTPMHLSTHKSYHNKLKVRNGNKPTLKTKFECDICHKSLKKQKYLNLHMRNSHYDNSKLFVCWCGQRFPTLINLCSHKKRQHGPNGGNAINSPIKTQFQCDICKKMFKTKACLKAHITSVHYEKGKIFECKCGKQFPTPTGLYGHRIRQHGGIIKNGINAATRAQFQCDICQKVFKRKIYLIVHMTSIHYDYGKTFECWCGKQFRSPVHLREHKSRLHNIKSKNNDRFQCDICQKIFKHKMYLTIHMNIHNDYGKLFECWCGKQFSKSIQLHRHKIRLHGVRVENENDASLQTQFQCDFCHKIFKLKDYLIKHIKSIHYDYGKSFECWCGKKXYLTIHMNIHNDYGKLFECWCGKQFSKSIQLHRHKIRLHGVRVENENDASLQTQFQCDFCHKIFKLKDYLIKHIKSIHYDYGKSFECWCGKKFSTPMYLHKHKTRHIDAKVENGSNAEHQFQCHICHKILTRSKYLAEHIKNVHECWCGKQFSTPECLRIHEREYNCKHNSENNNKYKCECCGSIFKVQRYLTKHMKRMHWEQSVVEEINIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -