Basic Information

Gene Symbol
stc
Assembly
None
Location
GWHABGR00000017:10013752-10028594[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 1.5 1.6e+04 -3.7 1.6 15 19 309 313 308 313 0.81
2 11 0.08 8.3e+02 0.4 0.6 4 10 343 349 342 349 0.93
3 11 9.6e-05 0.99 9.7 16.3 4 19 357 372 355 372 0.93
4 11 3.8e-08 0.0004 20.6 11.9 1 19 408 426 408 426 0.97
5 11 1e-05 0.11 12.8 13.5 1 18 467 484 467 485 0.98
6 11 0.00093 9.7 6.5 14.6 1 19 526 548 526 548 0.87
7 11 2 2.1e+04 -4.7 2.2 6 10 578 582 578 582 0.94
8 11 0.0024 25 5.2 7.2 1 11 588 598 588 599 0.95
9 11 0.035 3.6e+02 1.5 0.4 4 10 603 609 601 611 0.92
10 11 3.1e-07 0.0032 17.7 12.2 3 19 617 633 615 633 0.92
11 11 2 2.1e+04 -4.7 2.2 6 10 650 654 650 654 0.94

Sequence Information

Coding Sequence
ATGATGCCAAATCAGCCTTATGCAAATGACTTAATATTGAAATCAAACCTTACACCGACTGCAACAGAATTTGTGCCAAAAAGTATGATACCACCAACCACAAGCAGCCAAAATATTGCCGAAACTTCTAATACATTTAATGATACTACTGAGCTCACGAGTAAACAGGTTAGCTCATCTGATACTAACTGGAGAGAAAGACCACAGACCTCCCAACAGAAAGATGAAGTAACCTACAGAGATTCTAATAGTTATTTACAAGAAAATCAAAGGCCACAAGGCAGTGGTCGTAATAGAGAAACAAGTCGTGATAGCCATTCAAATGGTCACAATTATGAGGCAAGTAATAGAAGCTATGAAAGAAATCAGTATGAATCTGTGAACCATAGCAATGATCAAAATACTCGTAATTATGAGCCCAATACTCAGTATGAGAAAAGGGTCCAAACAAAACAAAATCCCAAAATTAAACCCAAAGATTCAGAGGTGCGCACGTTTTATAATAGCTCAATTAATAGCAATAGCCAAGATGTGAGAAATGGAAGAGGTGAGAGTTCCACCAAATCAAAAAATAGAGTGGGAAGTTACCGTCTCAGGGCTATTGATAGAAACAAAATTGAAGATGAGGAATTTGCCAATAATTATCTGCACCAGAGGGATGAGAAAGTGGAGAAAGATAAACCAGGGATATTTTCCAGTCCAATCAGATATAGAAACAAAAATATAGACCAAGGTCACAAGGAAATGACACAAAGGGAGCGTCTTACAGAACAATTAGAGAAGGGTACACTAGAGTGTCTTGTGTGCTGTGAACGTGTTAAACAAATAGACCCAGTGTGGTCCTGTGGGAACTGTTATCATGTTTTACATCTCAGGTGCATTAGAAAATGGGCAACCAGTAGCATGGTTGAGGGTAAATGGCGATGCCCTGCATGTCAAAACTCAAACAACGACAGCCTATCAGATTACCGCTGCATGTGCGGCGCGGTCCGTTCACCAGAGTACCAGCGAGGTTCTAACCTCGCTCACACATGCGGGAAAGCTTGCAAGAGACCACGCAATTGTCCGCATCCTTGCACTTTGCTCTGCCACCCTGGTCCATGCCCAGCATGCCAGGCAACTGTGATTAAACAGTGTGGCTGTGGTGCAGAGACTCGTTCAGTGTTATGCAGTAGTAAATTGGCACAAGTTTGCGGGCGCGTGTGCGATCGTACACTGGAATGCGGACTGCACAAATGCTTAAAGGATTGCCACGAAGGACCTTGTGATACTTGTACTGAAACTGTTGATCAAGTGTGCTACTGCCCAGCGGGTAAGTCTCAGTCAGTCCCGTGTACAAAAGAGACCAGTAAGAGCAAGCATTGGTCATGTGGTAGCGAGTGCGGTCGGGTCCTGTCGTGCGGTGCACACGTGTGTAGACAGGCCTGTCACTCGCCGCCGTGTCCGCCCTGTGTGCTACTGCCGGAGACTGTACTTACTTGTCCTTGTGGAAAGACCAGGTTAGAAAAGGATAAGCGTAAATCGTGTACAGACCCTATTCCTTTATGTGGGAACATCTGTGCGAAACCTTTAACTTGTGGCCCACCGGGAGACAAACATTTCTGCAAAGTTGACTGCCACAATGGTCCTTGCCCCGGATGCCCTGATAAAACTGTCCTACAGTGTCGTTGTGGCCATTCGAACCGCGAAGTACCTTGCGCCGACCTGCCTCAGATGTACAACAATGTAATCTGCCAGAAGAAATGTAACAAGAAATTGTCATGCGGTCGACACCGGTGCAGGACATTGTGCTGTGCGGAGAGTGTACACCGTTGCACGTTAGTGTGCGGCCGTTCGCTTCCATGCCAAACACATCGCTGCGAGGAGTTCTGCCACACAGGACGTTGTGCTCCTTGCCCCAGGCTCATACCTTGCGCCGAACTGCCTCAGATGTACAACAATGTAATCTGCCAGAAGAAATGTAACAAGCCCTACGTTTCACCAATAAAGTATGCTGACGAATCGGACACGTCTGTCGAAAATTTTAATTTAAATAAAGAAAAATTAGTACAATCAAAGATGCCTCGGAAATGTTTTCGAAAGAAGTTTTATTTATCTCCAAAATCGGAACTTACAAATACGAAGAAATCCCATTTCAATAGGAAATTTCGTTCAGGAGAATGTTGGCGGCGTTTTTCAAAAGATTCTTTTGGTAATTCGACCAAGAAATGTGAACGAACTAGCGAACCTTGGCGTGGTCTTTCTAGACTGTATAAAAAACTGAGTGAAAAATCATGGACTTCTAGCAGTATCTGGCCGGAATTTTCAAAGGCAAAAGACGTCAGCAGAGGTAATCGTTTGAGACTTTGCGACTGCTGCTGGCGGAGAGAGGTGGAGAATCCAATGTTAAGGATAGCTGGATATATCGACAATATGTTAAAGGAACTCGAAAAATGTAATAATATGTGA
Protein Sequence
MMPNQPYANDLILKSNLTPTATEFVPKSMIPPTTSSQNIAETSNTFNDTTELTSKQVSSSDTNWRERPQTSQQKDEVTYRDSNSYLQENQRPQGSGRNRETSRDSHSNGHNYEASNRSYERNQYESVNHSNDQNTRNYEPNTQYEKRVQTKQNPKIKPKDSEVRTFYNSSINSNSQDVRNGRGESSTKSKNRVGSYRLRAIDRNKIEDEEFANNYLHQRDEKVEKDKPGIFSSPIRYRNKNIDQGHKEMTQRERLTEQLEKGTLECLVCCERVKQIDPVWSCGNCYHVLHLRCIRKWATSSMVEGKWRCPACQNSNNDSLSDYRCMCGAVRSPEYQRGSNLAHTCGKACKRPRNCPHPCTLLCHPGPCPACQATVIKQCGCGAETRSVLCSSKLAQVCGRVCDRTLECGLHKCLKDCHEGPCDTCTETVDQVCYCPAGKSQSVPCTKETSKSKHWSCGSECGRVLSCGAHVCRQACHSPPCPPCVLLPETVLTCPCGKTRLEKDKRKSCTDPIPLCGNICAKPLTCGPPGDKHFCKVDCHNGPCPGCPDKTVLQCRCGHSNREVPCADLPQMYNNVICQKKCNKKLSCGRHRCRTLCCAESVHRCTLVCGRSLPCQTHRCEEFCHTGRCAPCPRLIPCAELPQMYNNVICQKKCNKPYVSPIKYADESDTSVENFNLNKEKLVQSKMPRKCFRKKFYLSPKSELTNTKKSHFNRKFRSGECWRRFSKDSFGNSTKKCERTSEPWRGLSRLYKKLSEKSWTSSSIWPEFSKAKDVSRGNRLRLCDCCWRREVENPMLRIAGYIDNMLKELEKCNNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-