Aper018908.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000047:5474132-5489282[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00077 0.05 14.3 2.6 2 23 208 229 207 229 0.95 2 10 1 67 4.5 7.4 1 23 247 270 247 270 0.94 3 10 0.00034 0.022 15.4 0.8 1 23 287 310 287 310 0.98 4 10 0.066 4.3 8.2 5.4 6 23 321 339 319 339 0.94 5 10 1.1e-05 0.00071 20.1 4.4 1 23 348 371 348 371 0.98 6 10 0.34 22 6.0 1.7 6 23 382 400 380 400 0.91 7 10 0.0062 0.4 11.4 2.5 2 23 413 435 412 435 0.96 8 10 2.2 1.4e+02 3.4 0.6 6 23 446 465 444 465 0.76 9 10 0.00053 0.034 14.8 0.9 6 23 476 494 474 494 0.95 10 10 0.00014 0.0091 16.6 2.3 1 23 506 529 506 529 0.97
Sequence Information
- Coding Sequence
- ATGGCTAATATTAGCAAGGAAATTAGGGAGAATATGAGGAAAAACCGCAAGGAGATAAGAAATAAAGTTTTGAGAGAAAATATAAAAATAACAGGTGGAACAAAAAAGGCCATGAAACAACTAAGCGAACATGGGAAAGAATGGATATCGAAACTAAAGCAACGCGAATCTTACTTAACTAATCGACTCTCAATACAGAAACTAGCTACGGACTATTACCGCCTATTTTATTCTGATAAATTCGATTCAGGGTTGACCACAATTCCGGAAAGTCCGTGTAAGCCATTAGGAACATCAGAGTGTGTTGATTACAGAGATAGTAAATTTTATGTGTTTAAAGAAGTGAAGAAAGAATTTCCTGAGGATGAATGCCCTCAGCCAGTCCACAATAGAAACAATGGATTAGTTTTTGAAAATAAGGAATTATCACAAGTTGTAGAGAGACAAGAATTAAAACAAGAAAATTCAGAGAAGAATTTGGTATTAATTAAAACTGAAAAAACAGACTATGAACAGTATCCAGTTATAGTTAAAATAGAGAGTCTACAGGAGCATAGAGTATTGGATAATTTTGGAGACGCCAGCGTACATTATGATGTCTTGGTAACTCCTCAACAAGTTCAGTGCAAGCTGTGTGATAGAACATTCAATAACAGATATTGTTTACTGGTACACAATAATGAACACATAAAAGTTGTAATGTATCCTACACTAATGGATATTGAAATCAATGAGTTACATAAGTGCAAGTGTTGCAATAAATATTTTAATAGTCATGATAATATGGTTGCACACTTCCGCGATGTACATAGCAATATAAAACCTTACCTTAATAAAAATAATACTGATGAAATGGAGTACAAATGTGACTTGTGTGTGCGCGTTTACAAAAGTAAAGAAACTTTAGTGGAACATAAAAAACGGATTCATGTTGACTACGGAAGGATGTTTGAATGCTCGTGCGGGAAGCAGTTCCGTACACCACATCACCTTTATCAGCATAAGACGCGGCAGCATAATCCTAACATAAACGATCAACAATTCCAATGTGACTATTGCCACAATTTTTTCAAAACCAAATATTATTTGATAATACATATAAGGACGATGCATTATGATTATGGTAAAACATTAAGATGTTCGTGCGGGAAACAGTTCCGTACACCGGTTCGTCTTCATCAACATAACCAGCAGGTGCATGGTGCTGTCAGAAAAATCATAAATAATGAAGGAATCCAATGTCATATTTGTCAGAAGCTGGTAAAAGCAAAAAGACATTTAACAATACATATAAAGAATGTTCATTATGATTATGGTAAAACATTTGAATGTCGGTGCGGTAAACAGTTCCCTACACCAAGCCGATATTTAGTGAGACATATAAAACATGTTCATTACGATTATGGTAAGATGTTTTTATGTTGGTGCGGAAAACAGTTCTCTAAACCAACGCTCTTACAGAGACACGAGAGGCGGCAACATCCTAATACTAATATTGCAGCATTAAAAGCGCAATTCCAATGTGATATTTGTTCGAAGTTTTTTAAGGCAAAGAGATATTTAACAGAACATAAAAGAAATGTGCATTATGATTATG
- Protein Sequence
- MANISKEIRENMRKNRKEIRNKVLRENIKITGGTKKAMKQLSEHGKEWISKLKQRESYLTNRLSIQKLATDYYRLFYSDKFDSGLTTIPESPCKPLGTSECVDYRDSKFYVFKEVKKEFPEDECPQPVHNRNNGLVFENKELSQVVERQELKQENSEKNLVLIKTEKTDYEQYPVIVKIESLQEHRVLDNFGDASVHYDVLVTPQQVQCKLCDRTFNNRYCLLVHNNEHIKVVMYPTLMDIEINELHKCKCCNKYFNSHDNMVAHFRDVHSNIKPYLNKNNTDEMEYKCDLCVRVYKSKETLVEHKKRIHVDYGRMFECSCGKQFRTPHHLYQHKTRQHNPNINDQQFQCDYCHNFFKTKYYLIIHIRTMHYDYGKTLRCSCGKQFRTPVRLHQHNQQVHGAVRKIINNEGIQCHICQKLVKAKRHLTIHIKNVHYDYGKTFECRCGKQFPTPSRYLVRHIKHVHYDYGKMFLCWCGKQFSKPTLLQRHERRQHPNTNIAALKAQFQCDICSKFFKAKRYLTEHKRNVHYDY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -