Aper018890.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000047:4895665-4905375[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3 2e+02 3.0 0.1 5 23 169 187 167 187 0.92 2 12 8.4 5.5e+02 1.6 0.5 2 20 205 223 205 227 0.85 3 12 0.048 3.1 8.6 2.4 6 23 267 285 264 285 0.92 4 12 9.3e-06 0.00061 20.3 1.9 1 23 301 324 301 324 0.98 5 12 0.018 1.2 10.0 2.3 5 23 334 353 332 353 0.92 6 12 1.6e-05 0.001 19.6 2.2 1 23 369 392 369 392 0.98 7 12 0.018 1.1 10.0 1.2 5 23 402 421 400 421 0.92 8 12 2.2e-05 0.0014 19.2 0.9 1 23 437 460 437 460 0.95 9 12 0.15 10 7.0 0.5 5 23 470 489 468 489 0.92 10 12 0.00071 0.046 14.4 0.4 2 23 506 528 505 528 0.95 11 12 0.00045 0.029 15.0 1.0 5 23 538 557 536 557 0.94 12 12 0.33 21 6.0 3.5 1 20 569 588 569 592 0.83
Sequence Information
- Coding Sequence
- ATGGACGGCTGGAAATCTCTAACAAGCGGCTGTGAGACACTGAATACCTCAGCAGAAAAGGCGCAGTGCAATGTACAGATGTTTACAACAACAATTAAACAGGAAACAGTACAGTGTTGTGATGAGGAAGAAAGTAACTGCGATAATCATATGTGCGGATATAGGTCATTAAAGTCACCGAATTGTGTCAATTACTATGATGGTAAATTCTGTGTGTCGGTAGAAGTGAAAGAAGAATTCCCTGAGGATGAATGCCCTGAGTCATCAACAGCAGCATCATGCATCAACAAGAGCGCTATAGATAGTAATATAGGTTTTGAAAATGAGGAATTATCAAGAGTTCTAGAGACACAAGAATTGAACCAGGAAAATTCAAAGGAAGCATTCTCCTTCATTAAAACAAAAGAGATCTGTAATAAAAAGAACCAGCAACGAATATTAAATAATGCTGGCGACACAAGTGTACTTTCTGAAGTCCGGACAACTCAAGATATTCAGCCCAAGATGTGTGGTGAAATATTAAAAAAAAGATTGAACTTATTAACACACAGCAATGAACATTTACAAGTTGAACCACCTACATCAGTAGATAATGAAAGGAATGAGTTAGGCAAGTGTGAGTGTTGCAATGAATATTTTAATAATGATGGAAATATGCTAGCACACGCCGATGATGTGCACAGCAATGAAAAACTCAAATCTCACAAATGCGACAAACATATTCTTAAACGTAAAACTGCCTTAGTAGAAGATACAAAAAATATCTATCATGATTCTGGAAAAGTATTTAAATGTCGGTGCGGGAAACAGTTCCGTACACAAACATACCTATCCGATCATAAGTATCGGCAGCATGGCCAGAAAGTAGAAAATAGTAAAGATGCCGCCGTAAAAAAAGAATTCCAATGTGATTATTGCAAAAGAAAATACCAAAGTAAAATCAATTTAGCAAAACATATAAGAAGGATCCATTATGATTATGGTAAAATATTTAAATGTTGGTGCGGGAAACAGTTCCGTTCACCAACACACCTATCTATACATAAGTATCGGCAACATGTCCGCAAAGTAGAGAAAACAAATAATGCAGCATTAGAAACAAATTTTCAATGTGATTTTTGCAAAAGACAATTTCAAAGTAAAGGCAATTTAAGACAACATATAAAAAGTATTCATTATGATTATGGTAAAATATTTAAATGTTGGTGCGGGAAACAGTTCCGTACACCAAAATATCTATCTGATCATAAGTATCGGCAACATGGCTCCAGAGTTGAAAATACAAATAATACCGCTTTAATAAAAGAATTCCAATGTGATATTTGTAAGAAAATTTTCAAAAGTAAAGACGTTTTGAAAACACATGTAACAAGTATCCATTATGACTATGGTAAAACTTTTAACTGTTGGTGCGGGAAACAGTTCCGTGCACCAAGATACCTATCTGCTCACAAGTATCGGCAGCATGCCCCCAAAGTAAAACATACAAATAAATCAGCTTTAAATAAAGAATTACAATGTGATATTTGCAAGAAATTATTGAAAGGAAAGAACAATTTAAGAAGACATATAACAATTATTCATTATGATTCTGGTAAAAGATTTGAATGTTGGTGCGGGAAACGGTTCCGTACAAAGTTATATCTAAAAGCACACCAGAGGGATCAACACGATTGTATGAGTAGCAATGGAAATAAGAATAAGTATAAATGTGAACATTGCGAGTTAGTTTTTAAAGCGAAACGGTATTTAGCTTGTCACGTGGGAAAAAAGCATAGATAA
- Protein Sequence
- MDGWKSLTSGCETLNTSAEKAQCNVQMFTTTIKQETVQCCDEEESNCDNHMCGYRSLKSPNCVNYYDGKFCVSVEVKEEFPEDECPESSTAASCINKSAIDSNIGFENEELSRVLETQELNQENSKEAFSFIKTKEICNKKNQQRILNNAGDTSVLSEVRTTQDIQPKMCGEILKKRLNLLTHSNEHLQVEPPTSVDNERNELGKCECCNEYFNNDGNMLAHADDVHSNEKLKSHKCDKHILKRKTALVEDTKNIYHDSGKVFKCRCGKQFRTQTYLSDHKYRQHGQKVENSKDAAVKKEFQCDYCKRKYQSKINLAKHIRRIHYDYGKIFKCWCGKQFRSPTHLSIHKYRQHVRKVEKTNNAALETNFQCDFCKRQFQSKGNLRQHIKSIHYDYGKIFKCWCGKQFRTPKYLSDHKYRQHGSRVENTNNTALIKEFQCDICKKIFKSKDVLKTHVTSIHYDYGKTFNCWCGKQFRAPRYLSAHKYRQHAPKVKHTNKSALNKELQCDICKKLLKGKNNLRRHITIIHYDSGKRFECWCGKRFRTKLYLKAHQRDQHDCMSSNGNKNKYKCEHCELVFKAKRYLACHVGKKHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -