Aper006089.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000003:5675929-5683879[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.011 0.74 10.6 1.5 1 23 241 264 241 264 0.94 2 17 2.7e-05 0.0018 18.9 3.2 1 23 269 291 269 291 0.98 3 17 3.1 2e+02 2.9 0.4 2 23 295 316 294 316 0.88 4 17 0.052 3.4 8.5 0.3 1 23 321 344 321 344 0.93 5 17 0.72 47 4.9 0.8 5 23 408 427 405 427 0.92 6 17 7e-05 0.0045 17.6 1.3 1 23 433 456 433 456 0.95 7 17 0.0074 0.48 11.2 0.2 2 21 460 479 460 480 0.93 8 17 0.027 1.7 9.4 1.0 1 22 488 509 488 511 0.90 9 17 0.032 2.1 9.2 0.5 1 23 516 539 516 539 0.95 10 17 0.0079 0.52 11.1 0.1 2 23 552 573 551 573 0.94 11 17 0.0013 0.083 13.6 1.6 1 23 579 601 579 601 0.98 12 17 4.7e-05 0.0031 18.1 2.3 1 23 636 658 636 658 0.97 13 17 0.0052 0.34 11.7 0.3 3 23 663 682 662 682 0.97 14 17 0.14 9.4 7.1 1.9 2 23 700 722 699 722 0.96 15 17 8.9e-05 0.0058 17.2 3.9 1 23 728 750 728 750 0.98 16 17 0.00022 0.014 16.0 6.7 2 23 757 778 756 778 0.95 17 17 0.00059 0.039 14.6 1.0 1 23 784 807 784 807 0.96
Sequence Information
- Coding Sequence
- ATGGAAGACGAGGGTCAGCTCAAGAAATCTAAAAATATTGAATGGATAAAAAATAAACTCACGGCGATATGGAATTCGCCAAAATTCTGCGGAATGTGTTTGAATAACTCAGAAAATCTGAACAACATCAACATGGAATTTTTGTTGGGTAGACAGAAAGAATCTAAATCACTGATCGACGTTATGAATTATGTATTTAATGACGATATTCAAAGCATCATGTCAAGTACATTCGTATGTGACCTTTGTACAGAAAAAACACTACAATCCTATTTATTCATATATAACACGAAACAATTGTCAAAAATTATCAGCAACTGCGTCACGGACATTTACAGCAAAGTTGTAGACGTTCGAGAGCAAGTCTTGAAATCATTTGATTGGGAAAACGCAAATATTATGATTGTTTTGGAAAATGATACAGAATTATACGAAGGAATCGATGACATTACAACGGTTACTGAAATCGTTCCAACCGATAAGCCTATAGTTAAAAAATATATAACACCGTTAATAGAAGAATCTCCTAAAGTGGATGAAGAAATAAACAATCATGTCAAAGCAGAACAACTTGAGAGCAAAATCGATATAGAAACAGTTGCTCCTCCCAAAATAGAAGTAATGGATACCGCTCCAAATATAAGTTTTGAGAAAGGGAAAATCGTTGTTAAACCTATTAAAACATTAATCGATATTCCGTCCGCTCCGAGTTACACAACGTATAAATGCAAACAGTGCCCGGATATATTCACAACATACAGAACATTGAAGGAACATGAGAAAGCGAAACACAAATCGCAAATTTATCAATGCAAGTTATGCGATAAATCCTACAACACTCAACAATACCTTAACCTTCACTATAAGAACCACGCGAAGTCACGTTGCAAAATCTGCCAGATGATATTAAGTGAGCAAGACCTTTTCCTTCATTTAAAACAGATACATGCACATTTAGTTTATCCGTGTCAATTCTGTGAACTCGTTTATTATACCCAAGAAGCTTTGGACACACATTTCAAAGCGAATCACTTAATCAACAACACAACGTCCCAATCGCAATGCGTTATGTGTTTGAAAGAGATGAGTAAAATGGAATTAAAAAACCACAAATGTAAATTCAGCTGTTCCGATTGTTTCGTTATGCCGTGCATTCATTACAGCTATCTGATCGCTTACAGGGAGCAAATTCTGAAGCATGCCACTAAAGTGAATTGTATCGATTGCGACTATATCACTCATAGGAAGGAATATCTCGTGACACATGTCAATAGAGAGCATTTAGATTACCATCCGTTCACGTGCAACGACTGCGGTATGCAGTTTTACACAAAACTTAGCTTGAAAAACCACATAGAACAGTATCATATTGATAATGTGTGTGAATATTGCGATGAGGAGTTTAAGAAACGCAATCTTCTGTATGAACATAGGAAAGCTTGCAAATTAGTAACTAGAGCGTTCAAATGTAACCAATGTGTTGCATCGTTTGACTCTGAAGAAGACTATACCAAACATGAATTCCTTAGACACAGTAATGGGGGATACGTATGTACAATGTGCAACAGAAGATTCCTTGAAGAAATCCATTTGGAAGAGCACCAAGTTACTGCACATAGCAGTATACAATTTAAAAAAAGACGCAAGAATATTGAATGCTCGCTCTGTGATATAAAGTTTAATAACGTCAAGGAGTTGGTAAAACATGAAGAATTACACGGACCTAATTCTGTATACCCTTGTAAGAGTTGCGATAAAGAGTTTTACAGTTTAAAAAAATTATATATGCATCAAGCGAGACATTACGATAGAATCGCTTGTAGCGGCTGCAAAAAGAGAATCATTTCAGTTTTCTACCCGCAGCATGCTGTGCGTTGCGTCTATAGGAGAGATACAAGTCAGTGTCATATTTGTGAAATATGTGGTAAATCCTTCCACCTAGAAACTCTCCTCCAAGCTCACCAGAAAACCCATAAGAGAGTCGATTGTAGAGAATGTGGGAAGACTGTAAAAGCCTCGAACATCCAAAACCACATGAGAGCTCATGCTGGAATAAGTTACGTGGGAGGTAGACCGGTGAAAACTTTCCCGAAGATCGAATGCGTTATCTGCGGACACCTGCTGAGGAAAAAGTGTGATTTAGACGCGCATATGAACAGATTCCATCTGAAAGTTAAACCATACGTTTGTCATATATGTAAGAAGAGTTTTTGTGGGAAAGCGCGTCTGAACGAGCATCTATTGACACACACCAACAGCAACGCGTGCCATTGTTCAATATGTGGGAAAAAGTTTGCTAATAAAGTGTGCCTGAAAATGCACTTACGAATTCATACAGGAGAGTGTCCTTACGAGTGTGATATTTGCGGAGAAAAGTTCAGATCTTCGAGCATTATGAAAACGCACAGACTTAAAAAACATTTAGAGAAAACTATCGCATGTCCGTCCTGCGATAGTATGTTTCATATCGTTCGAGAAATGAGACATCACTTCAAAAATGTACACTGGAAGGCGAAAAGTAAACCTTTTAACTACAAGGAGGCAGTTTCCCCAGAGTACTACTATCTGTTTGAAGATGGAAGATTACCGAAGGTCGATTCAGATGTCACAATTGAAACAACATCGGGAGCGTAA
- Protein Sequence
- MEDEGQLKKSKNIEWIKNKLTAIWNSPKFCGMCLNNSENLNNINMEFLLGRQKESKSLIDVMNYVFNDDIQSIMSSTFVCDLCTEKTLQSYLFIYNTKQLSKIISNCVTDIYSKVVDVREQVLKSFDWENANIMIVLENDTELYEGIDDITTVTEIVPTDKPIVKKYITPLIEESPKVDEEINNHVKAEQLESKIDIETVAPPKIEVMDTAPNISFEKGKIVVKPIKTLIDIPSAPSYTTYKCKQCPDIFTTYRTLKEHEKAKHKSQIYQCKLCDKSYNTQQYLNLHYKNHAKSRCKICQMILSEQDLFLHLKQIHAHLVYPCQFCELVYYTQEALDTHFKANHLINNTTSQSQCVMCLKEMSKMELKNHKCKFSCSDCFVMPCIHYSYLIAYREQILKHATKVNCIDCDYITHRKEYLVTHVNREHLDYHPFTCNDCGMQFYTKLSLKNHIEQYHIDNVCEYCDEEFKKRNLLYEHRKACKLVTRAFKCNQCVASFDSEEDYTKHEFLRHSNGGYVCTMCNRRFLEEIHLEEHQVTAHSSIQFKKRRKNIECSLCDIKFNNVKELVKHEELHGPNSVYPCKSCDKEFYSLKKLYMHQARHYDRIACSGCKKRIISVFYPQHAVRCVYRRDTSQCHICEICGKSFHLETLLQAHQKTHKRVDCRECGKTVKASNIQNHMRAHAGISYVGGRPVKTFPKIECVICGHLLRKKCDLDAHMNRFHLKVKPYVCHICKKSFCGKARLNEHLLTHTNSNACHCSICGKKFANKVCLKMHLRIHTGECPYECDICGEKFRSSSIMKTHRLKKHLEKTIACPSCDSMFHIVREMRHHFKNVHWKAKSKPFNYKEAVSPEYYYLFEDGRLPKVDSDVTIETTSGA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01312471;
- 90% Identity
- iTF_00114387;
- 80% Identity
- -