Basic Information

Insect: Antheraea pernyi
Gene Symbol: GFI1B
Assembly: None
Location: GWHABGR00000015:9915040-9956634[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 1.1e-05 0.00069 20.1 0.9 1 23 173 196 173 196 0.97

2 6 0.0011 0.073 13.8 0.6 1 23 202 224 202 224 0.96

3 6 9.9e-08 6.5e-06 26.5 1.7 1 23 230 252 230 252 0.98

4 6 1.3e-05 0.00084 19.9 4.3 1 23 258 280 258 280 0.97

5 6 1.2e-07 8e-06 26.2 2.5 1 23 286 308 286 308 0.98

6 6 7.4e-06 0.00048 20.6 0.5 1 23 314 337 314 337 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	1.1e-05	0.00069	20.1	0.9	1	23	173	196	173	196	0.97
2	6	0.0011	0.073	13.8	0.6	1	23	202	224	202	224	0.96
3	6	9.9e-08	6.5e-06	26.5	1.7	1	23	230	252	230	252	0.98
4	6	1.3e-05	0.00084	19.9	4.3	1	23	258	280	258	280	0.97
5	6	1.2e-07	8e-06	26.2	2.5	1	23	286	308	286	308	0.98
6	6	7.4e-06	0.00048	20.6	0.5	1	23	314	337	314	337	0.96

Sequence Information

Coding Sequence: ATGACAATTTATGCTTTTCATAAAATCAATTTTGGTATCAACCGCTTAGTCGGTGATCGTATAGAAGATGAAGAGGAAGATCATACCAATGAAGTCAGACCTGAAGTTGTTTCACCAGCTTCACGTTGTGGGAGTCCTTGTTGGGCTCCATCGCCCCAGTCACCAAGATCGATCCGTTCAAGTTCACCTGAACTTGAAGTCGATTCTCCTCCATCCTCTCCAAGAAGACAACCAGATTCGTCACCACCACCGAAAAGATCAGAAGCTTTTTCAGTTAGCGCACTTCTGAGACCTGACGCTCCAAGAGTTCAGCCCCAAAGACCGTTCTTGTACCCGCCGCTGCCGTTTGCGGAGTTCTTGAGAGATGCAGGAAGTCTTGGCCTTCCAGGATGGGGTGGTTACAGTAACTTATATCTTCATGCTGTTCAAGCAGCTGGACCGGAACTGCTAAGACTGCGAGCAGCAGTTTTAGGAGCACCCGGTCCTTTGTCAAGACCTTTGCCGATAGGAGATGTATACTCTTGTGTGAAATGTGAGAAAATGTTTAGTACACCTCATGGACTGGAAGTGCATGCGAGAAGATCGCATAATGGGAAACGGCCCTTTGCATGTGAACTATGTAGTAAGACTTTTGGACATGAAATTAGTCTCAGCCAGCATAGGGCTGTTCACAGCGTAGAAAAGGTGTTCGAATGTAAACAATGTGGAAAGACATTCAAAAGATCCAGCACCCTGTCTACTCATCTTCTTATTCACTCTGACACCAGGCCGTACCCTTGCCAGTACTGTGGCAAGCGGTTTCATCAAAAATCTGACATGAAAAAGCACACGTATATTCACACAGGTGAAAAACCACATAAATGCCAAGTGTGCGGCAAAGCCTTCAGCCAGAGCTCGAACCTGATCACCCACTCTCGCAAGCACACCGGGTTCAAACCTTTTGCGTGTGAACTGTGCGGAAGAGCGTTCCAGAGGAAGGTCGATTTAAGACGGCATAAGGAAACTCAGCATGCCGATTTGCGACCCACGCAGACGCATATGCAACCTCCGCATACCGACGTGCATGGCATGCATGCGGACATGCACGCTGTCGCCGATCATCGGATAGACCTCCGCCAACCACATCCTGAGCTCAGACAACCGCACCCAGACTTCAGGGCTTCACATATGAGCACTGCTGTCCCACCGCTGCAGCCTCTACCATCCTGA
Protein Sequence: MTIYAFHKINFGINRLVGDRIEDEEEDHTNEVRPEVVSPASRCGSPCWAPSPQSPRSIRSSSPELEVDSPPSSPRRQPDSSPPPKRSEAFSVSALLRPDAPRVQPQRPFLYPPLPFAEFLRDAGSLGLPGWGGYSNLYLHAVQAAGPELLRLRAAVLGAPGPLSRPLPIGDVYSCVKCEKMFSTPHGLEVHARRSHNGKRPFACELCSKTFGHEISLSQHRAVHSVEKVFECKQCGKTFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGFKPFACELCGRAFQRKVDLRRHKETQHADLRPTQTHMQPPHTDVHGMHADMHAVADHRIDLRQPHPELRQPHPDFRASHMSTAVPPLQPLPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00820368;
90% Identity: iTF_01312462; iTF_00114358; iTF_01361960; iTF_00043851; iTF_00851084; iTF_00447546; iTF_01363379; iTF_01154474; iTF_00236107; iTF_00276749; iTF_00820368; iTF_00433428; iTF_01147577; iTF_01487996;
80% Identity: -