Aper018961.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000047:5763594-5769392[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.002 0.13 13.0 4.0 2 23 133 155 132 155 0.91 2 12 0.0078 0.51 11.1 6.3 2 23 198 220 197 220 0.96 3 12 5.1e-05 0.0033 18.0 2.1 1 23 230 253 230 253 0.97 4 12 0.09 5.9 7.8 3.9 6 23 264 282 262 283 0.93 5 12 0.00011 0.0073 16.9 0.8 2 23 296 318 295 318 0.96 6 12 0.0054 0.35 11.6 0.7 6 23 329 346 327 346 0.95 7 12 2.8e-07 1.8e-05 25.1 2.5 1 23 357 380 357 380 0.98 8 12 0.022 1.5 9.7 1.7 6 23 391 409 389 409 0.97 9 12 0.00028 0.019 15.6 2.6 1 23 419 442 419 442 0.98 10 12 0.023 1.5 9.6 0.1 5 23 452 471 450 471 0.95 11 12 0.00059 0.039 14.6 2.4 1 23 482 505 482 505 0.98 12 12 0.072 4.7 8.1 0.1 5 23 515 534 513 534 0.92
Sequence Information
- Coding Sequence
- ATGTCAGAACAAGTGAAGAAGGAAGTGCGCGTAGAGGAATGTAACCCAGCAGGAGATAGTGCAATTAATAAAATAGTTACTGAAAATAAGGTTTTATCAAATCTTAAAGCCGAAAAAAAATTGGAATGTGTAAACATAGAGGAGGGAACCTTCGTAAATATAAAGCAGGAAGATAAGGGTAAAATGTATGAGATTGCAATAAAAGAGGAAAAATTAGAAGAGCAAACGACATTGGATAATAGTGGAAAAGGCGACGCAGACTATGATCCCTTATTGGTTCCTCGGAAGATTCAATGTAGTTTGTCTGGTAGACAATTCGGGAATTACAATGCATTACAGCACAATAATGAATTCATAGAAGTTGAAGTAAACACACCAGGGTTTCATGAATTATGCAAATGCCAATTTTGCGACAAACACTTTGACACTTATAGTAATATGCTTGCACATATAACTGATGATCATAAGAAAACGAAACCGATATTTGAATTATGTGGAAAGGGATTCAAGAAGGAACAGAATGTTGAAGATGATTTCGTATTTTTACACAAAACCAAGAAGTCTCCAAAGTGTGTGAGGAAAAATTCAGTGAAATGTAAATACTGCAACACAGATTTCAAACATAAATACAGATTGGATGAACATATGAAGTTATGTCACCCTGGTAAAGAGGATAAGGAAATCGTGTATAAATGTGACACCTGTGAGAGAGTTTTTAAGAAAAGAGGGTCTTTAACACTGCATAAAAATAAAATGCACAATGATTATGGGAGATTATATGACTGTTGGTGCGGGAAACAGTTTAGTTCACATATCGAATTGCGTCTGCACAGGAAGCTGCAACATCATATAACAATCAAGAAGAATGAAAATAATGACAAGTTACAATGCAGCTCCTGCCAGAAGTATTTTAAATCTAAACCGAGTTTAGCACTACATATAAGGAAGATTCATTATGATTATGGGAAAGTATTTGAATGTTTATGCGGGAAACAGTTCCGTTCACCGATCTACTTAAAAGAGCATAAGAAGTTGCATGAACGAACTCAGAATACAGATAAAGCTAAATACCAATGTGACTCCTGCAAGAAGGTTTTCAAAAGGAAATCGAATTTACTCGTACATATAAAGAGATTCCATTACGATTATGGGAGATTGTTCGAATGTTCCTGCGGTGAACAGTTCTGTTCACCGATACTTTTAAATCAGCACAGGAGGCGGAGGCATGATCTCAAGATTCCAATAGCCAATCGGTTCCAATGTGACTCGTGCCAGAAGTTATTCAAAACGAAGCCATGTTTAATAGCGCACATAAAGAGAATGCACTATGATTATGGGAGAACATTTGAATGTTGGTGCGGCTATCAATACCGTTCACCGATACAACTGCAAGAGCATGAGAGGATGCGGCATTATCCCAAGGTTGACAGGAATAATGTGAAATTCCAATGTGACTCCTGCAAGAAGTTCTTCAAAGCGAAACAGTCTCTAGTTGAACATATAAAGAGGTTTCATAACGATCATGAGAAACTGTTTGAATGTTGGTGCGGCGAAGAGTTCCGTTCGCAGATGGAGTTGAGTGAACATAAAGAGGTAGAACATGTTGTGTCTTTTGGCGGATTTAAATTTAGATTTTAA
- Protein Sequence
- MSEQVKKEVRVEECNPAGDSAINKIVTENKVLSNLKAEKKLECVNIEEGTFVNIKQEDKGKMYEIAIKEEKLEEQTTLDNSGKGDADYDPLLVPRKIQCSLSGRQFGNYNALQHNNEFIEVEVNTPGFHELCKCQFCDKHFDTYSNMLAHITDDHKKTKPIFELCGKGFKKEQNVEDDFVFLHKTKKSPKCVRKNSVKCKYCNTDFKHKYRLDEHMKLCHPGKEDKEIVYKCDTCERVFKKRGSLTLHKNKMHNDYGRLYDCWCGKQFSSHIELRLHRKLQHHITIKKNENNDKLQCSSCQKYFKSKPSLALHIRKIHYDYGKVFECLCGKQFRSPIYLKEHKKLHERTQNTDKAKYQCDSCKKVFKRKSNLLVHIKRFHYDYGRLFECSCGEQFCSPILLNQHRRRRHDLKIPIANRFQCDSCQKLFKTKPCLIAHIKRMHYDYGRTFECWCGYQYRSPIQLQEHERMRHYPKVDRNNVKFQCDSCKKFFKAKQSLVEHIKRFHNDHEKLFECWCGEEFRSQMELSEHKEVEHVVSFGGFKFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114334;
- 90% Identity
- iTF_00114334;
- 80% Identity
- -