Aper015600.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000022:9917516-9942739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.016 15.9 0.7 2 23 232 253 231 253 0.97 2 11 0.041 2.7 8.8 1.9 1 23 260 283 260 283 0.94 3 11 0.00027 0.018 15.7 2.7 1 23 314 337 314 337 0.98 4 11 0.0021 0.14 12.9 2.5 1 23 341 364 341 364 0.96 5 11 3.3 2.1e+02 2.9 0.2 3 22 382 401 381 405 0.90 6 11 0.00047 0.031 14.9 0.3 2 23 414 435 414 435 0.98 7 11 0.00026 0.017 15.8 1.0 3 23 457 478 455 478 0.95 8 11 2.1e-05 0.0014 19.2 1.1 2 23 488 509 487 509 0.97 9 11 4.7e-07 3.1e-05 24.4 0.7 1 23 515 537 515 537 0.98 10 11 1.6e-06 0.0001 22.7 2.2 1 23 543 565 543 565 0.97 11 11 1.4e-05 0.00094 19.7 1.8 1 23 571 594 571 594 0.98
Sequence Information
- Coding Sequence
- ATGTCGTTTGCATCTTTTTGCCGAATTTGTTTAGCTGCGAATACTAGTATGCATATAATATGTAATACAAGCCTTCAAGAGGTTTACGAAAAACTAACGAATATAAAGCTGCAATTGGCCAATGAGAAAATGCTAGTGGCTTGCAATTTTTGCCACTCCCAGCTTCACAAATGCCACCAGTTTATGATGAGAGCACAAAGGGCCCATGAATTTTTGGAAGATATTTTTATAAAGAATATTGAGGGAACAAGTGAACATATTAAGGCAATAGATAGGGAGAAGAGTGATCTAGTATATAGTTTATCAATTGGTGCAATCTGGCATGTCTCCATAGCTCCGGAAGACATTTTGTGCAATGTAAAAAATGAGGATTCATGCTTAGATCCAGAGGAGCCATTAAAGAACGAAATAGCTGAAACAAATGTAAACATTGATAGTAATTGCAAAGCGGAGACCGACTATGTAGACAATAACGATGGTGCAATGACAACGGACTCTGAAGACAATTTACCACTCAACAGTATCAGTACGAATAAGAGATTGGGAGTGATGGTTCATGTTAAGAAAAAGGTGCGGAAAAGGAAAACTAAAGATCTGAAGTTAGATGCGTCCGAAATCCATCTTACCAAAGAGGAGCAGCTTGAGGAATTGTTAGCACGAGCTAAAACATTAAACTATTTGAATTCACCGCTGAAGTGTGAATACTGTTATAAAGGATTCATAGATACAAATGCTTTTAATAATCACATGGAGAAGCATGATGAGCGCAGCGGTGCGCACGAGTGTGACGTGTGCCGTATGCGTTACCAGTCCGCGCGACATCTCCGTATGCACGCGAGTTCAGCGCACGCACGGCTATTCCGGTGCAACCGTTGTGCGCACACCTCACACACCAAGAACCAAGCGAGAGAACACGAGAAATGGCACAGCGGTCACACATACGAGTGTCAACTTTGCAGTCAGAATTTTAGTAAATCGACATCATATTTGACGCACATGAGGAAGAGCCACCCGACTGAGTACGTGTGCAATATATGCGGCAAAAGCTGCATAGGAAGGCACGGACTACTCATGCATAAGAGTAAAACACATCGACGAATAACAGAAGTTACAGCATCAGAGGACCCCCCGTCAGATAGGTTCTGTTCAGAGTGCAACGTTCAATTCCTGAGTGTTGAAGCATGGAAGCGACATATACTGACCTCCGTGAAGCACTCTCTTGAAAATGAGAGTAATCCACAGTGCAAGATATGCGGTGAACAGTTCGCTAGCGGTAATTTTCTGTCTACCCACATGCGGGGACACGAGAAGACGCTACGACAAACGGCACAGGTGGCAGCACCCACCCTCAAACTCATCGAGCTGGCCTGCGAACAGTGCGGAGCGAAGTTCGTGAACCGTTCGAAGCTCCATACACATGTGAAAAGGATACATCTCGGTGTCAAATACAACAAGAACATAGTCTGCGAGGTCTGCGGGAAGAAATGTGTTTCGTACGCGTCGCTGCGGTACCACCAGCGCACGCACACCGGCGAGCGGCCCTTCCCCTGCGAGCGCTGCGGGAAGCGCTTCGCCGACAGCAACCAGCTGCGCATACACACGCGCACGCACACCGGCGACCGCCCCTACTGCTGCGCGCTCTGCGGGAAGCGATTCACGCAGAAGCCCGCGCTCAACCGCCACTACCGGATTCACACCGGAGCGAAGCCATACGAGTGCCAGTTCTGCTCGAAGTCCTTCAGCCAGTCGAATTCCATGAAACTCCACGTCAGGACGGTTCACCTGAAGCAAGGTCCAAACAGGAAGACAAGTAAAGCCGGCGCACAGGAAGCTTTAGAAAATTAG
- Protein Sequence
- MSFASFCRICLAANTSMHIICNTSLQEVYEKLTNIKLQLANEKMLVACNFCHSQLHKCHQFMMRAQRAHEFLEDIFIKNIEGTSEHIKAIDREKSDLVYSLSIGAIWHVSIAPEDILCNVKNEDSCLDPEEPLKNEIAETNVNIDSNCKAETDYVDNNDGAMTTDSEDNLPLNSISTNKRLGVMVHVKKKVRKRKTKDLKLDASEIHLTKEEQLEELLARAKTLNYLNSPLKCEYCYKGFIDTNAFNNHMEKHDERSGAHECDVCRMRYQSARHLRMHASSAHARLFRCNRCAHTSHTKNQAREHEKWHSGHTYECQLCSQNFSKSTSYLTHMRKSHPTEYVCNICGKSCIGRHGLLMHKSKTHRRITEVTASEDPPSDRFCSECNVQFLSVEAWKRHILTSVKHSLENESNPQCKICGEQFASGNFLSTHMRGHEKTLRQTAQVAAPTLKLIELACEQCGAKFVNRSKLHTHVKRIHLGVKYNKNIVCEVCGKKCVSYASLRYHQRTHTGERPFPCERCGKRFADSNQLRIHTRTHTGDRPYCCALCGKRFTQKPALNRHYRIHTGAKPYECQFCSKSFSQSNSMKLHVRTVHLKQGPNRKTSKAGAQEALEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114316;
- 90% Identity
- iTF_00114316;
- 80% Identity
- -