Aper018638.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000047:5579359-5587783[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00034 0.022 15.4 3.3 1 23 180 203 180 203 0.93 2 17 0.00022 0.014 16.0 1.5 2 23 209 231 209 231 0.91 3 17 0.0018 0.12 13.1 5.2 2 23 246 268 245 268 0.95 4 17 0.00041 0.027 15.2 3.1 1 23 278 301 278 301 0.98 5 17 0.0055 0.36 11.6 1.3 6 23 312 330 310 330 0.95 6 17 0.0003 0.02 15.6 3.3 1 23 341 364 341 364 0.97 7 17 0.079 5.2 7.9 1.6 2 23 370 393 370 393 0.91 8 17 6.5e-06 0.00043 20.8 1.7 1 23 400 423 400 423 0.98 9 17 0.041 2.7 8.9 0.8 6 23 434 452 432 452 0.95 10 17 2.6e-05 0.0017 18.9 0.9 2 23 460 482 459 482 0.97 11 17 0.032 2.1 9.2 0.8 6 23 493 510 491 510 0.95 12 17 0.00014 0.0092 16.6 1.8 1 23 522 545 522 545 0.98 13 17 0.045 2.9 8.7 1.0 6 23 556 574 554 574 0.96 14 17 0.00032 0.021 15.5 0.5 1 23 583 606 583 606 0.97 15 17 0.0057 0.37 11.5 1.8 6 23 617 635 615 635 0.95 16 17 0.00018 0.012 16.2 3.1 1 23 647 670 647 670 0.98 17 17 0.0017 0.11 13.2 1.9 6 23 681 699 679 699 0.96
Sequence Information
- Coding Sequence
- ATGGATAGCAGAGAGCATTTAGTATCTACTTGTGATGGATTAGAAACAATAACTGTAGAGACACAGTTGAATTTAGAGATATCTACACCGACAATAAAGAAGGAAACACTTGACTGCATTGAAGAGGAAGAATCAGCTGCCAATGATTATGTGTATCCGTATGACCATCTGGAGTCAGCCGAGTGTGTAAATCATTATGACAGTAAGGATTTTTTGCAACAAGTAGTTGATCAAAATAATGAATTATCAAAAGTTAAAACTGAAGACACAGATGAGGGAATTTTATTAAATATGAAAACTGAAAATGAGGAGAAAAACTATGAGATCACAATAAAAATGGAAAACCCGGAAGAGGAAGATGTATTGGATAATATTGGAGACACCAACACACAGTATGATATGCTGATGGTTCCGCAAGAAATGCAATGCAATTCATCTCATAGGAACATCAGTAAGAATTTCAACTCGATAGAGCCCAGTACCGATCACATTAAAGTCGAAATTAACACACCAGGGGTTAATGTATTAAATGAGTTATATCATTGCCAGTATTGCAACAAACATTTTGATAGTTATAATAACTTGCTTGCACACATCAGTGATGTTCATAAGACGAACAAACCGGAATGTGGATTATGTGGCAAACGATTCAAGAATGAACTGAATCTTGAAAGACACCACCTGTTTTTACACAAAATCAAGGAATCTCCACAGCAGATTACTCCGAACAGTCTGAAATGCAAACACTGTAATGAGGATTTCAAACACGAATACAGATTGAATGAACATATGAAATTGTATCATCCCGGTAGCGAGATTGAGAAAACAGTGTACAAATGTGATTTTTGTGAACGCTTTTATAAAAGAAAACAAACTCTGACACTGCACGTAAAGAGAATCCATCAAGACTATGGAAAGACGTTTGATTGCTGGTGCGGGGAAAAGTTCCGTTCTCCGGTACACTTGTACGTACATAAGAGAAAGCAGCACGAATCCAAGGTAAAGAAAAGAAAATCAGGACACAAATGCAAAAGATGCGAGGCGGTTTTTAAAGTTAAACAGGATTTGAAGGACCACATGAAGAGAACTCATTATAAGCATATTGAAAAGTGTAAATGTTGGTGCGGGAGGCAGTTCTATTCACCTATAAAGCTGTCGGCACATGAGAGCTTGCGGCATTTTAGCAATAATGAGCAATTCCAATGCGACTCATGCCAGAGGATCTTTAAAAGGAAAGCGAACTTGGTCAACCATATAAAGAGATTCCATTATGATTATGGGAGGCTGTTTGAATGTTTCTGCGGTGAACAGTTCACGTCACCGATATTCCTAAATCAGCACAAGAGGTCACAGCACGATCCCGTTCCCGATAGAATACGATGCGAGACTTGCCAGAAGCTGTTCAAGTCTAAATCGAGCTTAGTTCTACATATAAGAAGGGTTCATTATGATTATGGGAGATTATTTGAATGTTGGTGCGGGAAACAGTTCCGTTCACCGTTATATTTAAGTCAACATAAGAAGTTGCATGACCGGAAAGTTCAGAACACGGACCCGGGTAAATTCCAATGTGACTCGTGTAAGAAGCTCTTTAAAAGGAAACCGGATTTACTCATTCATATAAAGAAATTCCATTACGATTACGGGAGGCTGTTTGAATGTTTCTGCGGTGAACAGTTCTATTCACCGATGCTCTTAAATCAGCACAAGAGGCGGCGACACGATACGAAGGATAATACGGATAAATTCCAATGTACCACATGCCAAAAGGTGTTCCAAACGAAAGTGGGTTTAGTGGGCCATGTAAAAAGAATCCATTATGAGTATGGGAGACAGTTTGAATGTTTCTGTGGGAAACAGTACCGTTCACCGATACACCTGCAGGAGCATCAAAGGTTGCGACATTATCGCAAGGTTAATAAGAGAAATGATGAGATATACCAATGTGAGTCCTGCAAGAAGATCTTCAAATCGAGAAGGTGTCTGGTCGTACATATAAAAAGGGTTCATTATGATTATGGCAGGACATTTGAATGTTTCTGCGGGAAACAGTTCCGTACACCGATGCAGCTTACTGTACATAAGAGGAAACGGCATGTTCAATCTTAA
- Protein Sequence
- MDSREHLVSTCDGLETITVETQLNLEISTPTIKKETLDCIEEEESAANDYVYPYDHLESAECVNHYDSKDFLQQVVDQNNELSKVKTEDTDEGILLNMKTENEEKNYEITIKMENPEEEDVLDNIGDTNTQYDMLMVPQEMQCNSSHRNISKNFNSIEPSTDHIKVEINTPGVNVLNELYHCQYCNKHFDSYNNLLAHISDVHKTNKPECGLCGKRFKNELNLERHHLFLHKIKESPQQITPNSLKCKHCNEDFKHEYRLNEHMKLYHPGSEIEKTVYKCDFCERFYKRKQTLTLHVKRIHQDYGKTFDCWCGEKFRSPVHLYVHKRKQHESKVKKRKSGHKCKRCEAVFKVKQDLKDHMKRTHYKHIEKCKCWCGRQFYSPIKLSAHESLRHFSNNEQFQCDSCQRIFKRKANLVNHIKRFHYDYGRLFECFCGEQFTSPIFLNQHKRSQHDPVPDRIRCETCQKLFKSKSSLVLHIRRVHYDYGRLFECWCGKQFRSPLYLSQHKKLHDRKVQNTDPGKFQCDSCKKLFKRKPDLLIHIKKFHYDYGRLFECFCGEQFYSPMLLNQHKRRRHDTKDNTDKFQCTTCQKVFQTKVGLVGHVKRIHYEYGRQFECFCGKQYRSPIHLQEHQRLRHYRKVNKRNDEIYQCESCKKIFKSRRCLVVHIKRVHYDYGRTFECFCGKQFRTPMQLTVHKRKRHVQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114284;
- 90% Identity
- iTF_00114284;
- 80% Identity
- -