Aper003383.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000017:8658331-8662267[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.4 6.1e+02 1.4 0.7 1 23 18 40 18 40 0.81 2 19 0.0014 0.088 13.5 0.1 2 23 64 85 63 85 0.96 3 19 1.2 77 4.3 0.9 5 23 93 112 90 112 0.94 4 19 3.3e-05 0.0022 18.6 0.2 1 23 185 207 185 207 0.96 5 19 0.0083 0.54 11.0 0.5 2 23 214 235 213 235 0.92 6 19 8.6e-05 0.0056 17.3 1.0 2 23 242 263 242 263 0.98 7 19 2.4e-06 0.00016 22.2 0.7 3 23 271 291 269 291 0.98 8 19 1.1e-05 0.0007 20.1 0.6 1 23 297 319 297 319 0.99 9 19 0.0046 0.3 11.8 2.7 1 23 326 348 326 348 0.97 10 19 0.43 28 5.6 2.2 1 23 354 377 354 377 0.97 11 19 0.0017 0.11 13.2 4.1 1 23 383 406 383 406 0.95 12 19 5.4e-05 0.0035 17.9 0.9 1 19 411 429 411 434 0.94 13 19 7e-05 0.0046 17.6 0.8 1 23 439 462 439 462 0.95 14 19 0.22 15 6.5 2.0 2 23 490 512 489 512 0.93 15 19 8.3 5.4e+02 1.6 1.8 2 23 520 541 520 541 0.85 16 19 0.00012 0.0078 16.8 0.7 1 23 547 570 547 570 0.98 17 19 0.062 4 8.3 0.4 2 21 575 594 574 595 0.93 18 19 2.1e-05 0.0014 19.2 0.2 1 23 602 624 602 624 0.97 19 19 2.3e-05 0.0015 19.1 1.3 1 23 630 653 630 653 0.96
Sequence Information
- Coding Sequence
- ATGGTTGAACCGGTAAAGAGACTAAATATAGTCTTGGATCGTGTGAAAATATATGCCTGTAAAGATTGTCTACAAGGGTTTCTTAGTTACAGGAAATATTTATTGCATCAAGTGCAACATAAACACAATGAAATATTGAATTCTAGGGATAAATATTATAATAAAGATTATGAGTCCCTGAAAGTCAATAAATGTGAAGAATGTGGCGTTAAGTTTGTGTTAGAAAGTACTCTGGAAACTCACCTTGTTGTTCATACCCCTTACCCGCACATATGTCATTGCGGTATCGGATACTATAGCAGTAGAGACCTTGGTTATCACATAAAGTTGGTACATGAAAAGATTAATAAAAAACTATCTGTTTCCAAAGAAAATGTTGAATACAAGTCTCAAAGTAAGGAGTCTAATCTCAAACGAAAATTGGACATAAAACCAAGATTAAAAGCGGATGTAATATTTAAACAAAAGTCCAATTGTAAGAAAAGCAAACCAAGGAAATGTTCAAGAAATGGCAGAATTAAAATAGAAGATGAGGAAGATGCCAACGGTGATTATGTATGTCCAGTATGTGCAAAAACATACAACCAAAGAGATAAACTCATTAGACATTTATCCGATCACTGTAACAGCAGAGATTTAAAATGCATACTATGCGAGAAGAAGTTCACCCAAGCGGGCAGCGTCAAGTTACATCTGATGAGACACTCAGGAGTAAAGGATGAGAAATGTAGTTACTGTGGTAAAACATTCGTTAATCGCTATGGCCGTATGTCACACGAGCGAATCCACACTGGTGTCAAGCCTTTTGGGTGCAGGTACTGCGGGAAAATGTTTTGCGATCCGTCCGCGTTGGCGCGACACGAAAGAATCCACACGGGGGATAAACGTTACAAATGTCAGTACTGTACTAAGGCGTTCACAGACGCCGGCTCCGCTATAAGACATAGATTAACACACGAAACAAACAGACGGACATATGCATGCGAAAGATGCAACAAAATATTTACAGCGAAACATTATCTAAAGTTTCACATGAACGTACATAAGGTGGAAAAGAATTACCAATGTGATCTATGTTCCAAGTGGTTCCTATTGAAGCAATATCTAAAGATACATATGTGTATGGTCCATTTTAAAGAGGAGAAATATGAATGTGATCAGTGCGGTAAGAAGTTTCAGGTCAAGAAGTGTTTACAAAATCATTTCGAAAGAAATCATGACAATACATACTATCAATGCGGTGATTGTGATAAGAACTTTAAAACGCAGTACTATTTGGTTATGCATAAATGGAGGGTACACAAAAGTCCTCGGTTCATGTGCAACGATTGCCCCAACCAGTATACAACGAAATCTGAACTATTGCGGCATATTGTCAAGAAACATATGAATATTAAATGCGATCGTTGCTTCTCACATTTCCATTGCAAGGGAGAGTTGGAGAAACATAAAAGAACGAGGTGCATCAAATGTCTTAAATGTGATAAATATTTCTCCTCCGTTTTGAAAAGGAGGCAACATTACGAAACGTTTCACTTAAAACAGATTAAACGGGAGAAATGTGATATCTGTGACATATACACCAGAGCGGATTGCATGAATAAACATAAAGCGAATTTTCACAGCACCATCAAAGAGTACCAATGTGATTATTGCAAACAATTATTCCCGTTAAAAGAGTCATTAAAAGCTCATATCATGAAACAGCATATGGTCGCGCTTTACTGTGACACGTGCCTAAAACCCTTCTACACCGATTCAGAATTCCAAAGTCATAAGAAAGCGGGTTGTCAAATAAAATTATATCCCTGTGAAATTTGCTCTAAAGATTTTACTTCTTTAACTAGTTTGAAGTCACACATCGTTGTCCATTGTGATAGATACAATTTTGTGTGTGATATTTGCAATGACAAGTTTAAGCGAAAGAACTCATTGAAACGACATATTAAACTTGTTCATGGCGGTATATGA
- Protein Sequence
- MVEPVKRLNIVLDRVKIYACKDCLQGFLSYRKYLLHQVQHKHNEILNSRDKYYNKDYESLKVNKCEECGVKFVLESTLETHLVVHTPYPHICHCGIGYYSSRDLGYHIKLVHEKINKKLSVSKENVEYKSQSKESNLKRKLDIKPRLKADVIFKQKSNCKKSKPRKCSRNGRIKIEDEEDANGDYVCPVCAKTYNQRDKLIRHLSDHCNSRDLKCILCEKKFTQAGSVKLHLMRHSGVKDEKCSYCGKTFVNRYGRMSHERIHTGVKPFGCRYCGKMFCDPSALARHERIHTGDKRYKCQYCTKAFTDAGSAIRHRLTHETNRRTYACERCNKIFTAKHYLKFHMNVHKVEKNYQCDLCSKWFLLKQYLKIHMCMVHFKEEKYECDQCGKKFQVKKCLQNHFERNHDNTYYQCGDCDKNFKTQYYLVMHKWRVHKSPRFMCNDCPNQYTTKSELLRHIVKKHMNIKCDRCFSHFHCKGELEKHKRTRCIKCLKCDKYFSSVLKRRQHYETFHLKQIKREKCDICDIYTRADCMNKHKANFHSTIKEYQCDYCKQLFPLKESLKAHIMKQHMVALYCDTCLKPFYTDSEFQSHKKAGCQIKLYPCEICSKDFTSLTSLKSHIVVHCDRYNFVCDICNDKFKRKNSLKRHIKLVHGGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -