Aper018706.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000047:14087916-14099433[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.33 22 6.0 1.2 1 23 75 98 75 98 0.93 2 19 0.11 7.3 7.5 6.7 1 23 164 186 164 186 0.95 3 19 4.9e-05 0.0032 18.0 1.0 1 23 190 212 190 212 0.98 4 19 0.0039 0.26 12.1 0.6 1 23 217 240 217 240 0.94 5 19 7.5e-05 0.0049 17.5 2.8 1 23 246 269 246 269 0.98 6 19 0.022 1.4 9.7 1.3 1 23 276 299 276 299 0.95 7 19 0.00041 0.027 15.1 1.5 1 23 305 327 305 327 0.96 8 19 1.5e-06 9.5e-05 22.8 0.6 1 23 333 355 333 355 0.99 9 19 6.8 4.5e+02 1.9 0.1 1 7 361 367 361 378 0.86 10 19 0.24 16 6.4 0.2 1 23 419 442 419 442 0.89 11 19 0.027 1.7 9.4 0.3 3 23 472 493 471 493 0.92 12 19 0.00062 0.04 14.6 1.1 1 23 515 537 515 537 0.98 13 19 0.0032 0.21 12.3 0.1 1 23 541 563 541 563 0.95 14 19 0.011 0.72 10.6 0.7 1 23 568 591 568 591 0.90 15 19 0.2 13 6.7 3.7 1 23 597 620 597 620 0.96 16 19 0.00023 0.015 15.9 0.1 1 23 627 650 627 650 0.98 17 19 1.6e-05 0.001 19.6 0.9 1 23 656 678 656 678 0.96 18 19 3.4e-07 2.2e-05 24.8 1.3 1 23 684 706 684 706 0.99 19 19 0.00014 0.0093 16.6 7.4 1 23 712 734 712 735 0.96
Sequence Information
- Coding Sequence
- ATGCACTTGACTTTACCTGCAGTATTAAATAAAACACTTCTTCGGGGAAGGAAAAATGAGAAAATACAGCCTAAGCGCGAAGTGGATTGTGTGACGGAGAATGTGACGGCTGTTGTCGCGACGACACGCGACGGTGACGACAGGAGGTCTATATTTAGGAATAACATTGCCATTATAATGCAATCGTCCTCCGCTTACCCTTTCAAGTATAGGAAAGGCACGTACCTGTGTTTCTTTTGTAAGAGCAGCTTCATGGAACCGGAAAAATTGCGCGAACACACACGCGACCAGCACTCCGATTTCAGACAGCTGAAGCCGCGGAAATACGAACCTTTGAAAATGGACTTCGCGACGATACACTGTAAACTCTGCGGGCTGGATATACCGAATTATCTGGCATTGAAGTTCCATTTAACAGTCGAACACGGCAAGGTGATAGATTCATCGTACGGGGAAAGTGTCCTACCATATAAACTGTGCAAGAACGAGCACTGTTGCCAGATATGCGGGAAGCGTTACGAGATGTTCCTGAGCCTCCACAAGCATATGAACGACCATTACGAATACTATATATGCGAGACGTGCGGAAAACGGTTCGCGACGTCGCAAAGGATGGTGAATCACACCAGGACACACGAGAGAGGAGAGTTCCCTTGCAAGAAATGCACAGAAACGTTCACGTCCTATTCAGCGAGGTACGCTCATGTCGCTAAAGTGCATAAATCAAACAAACGCTATAAGTGTCCGATATGTGATGAGAAATTCTCATCCTATAAACACAGGTTGAAGCATTTAAGTACGGTGCACGGGGAGAAGACGGCTGTTTTCCCATGTCCGTCCTGCCCGAAAGTATTCGACTTGTGCAGTCGGAGGACCGCGCATATACGCTTCCAGCACTTACAGGAACGGAAGCACGTCTGCTCGGTGTGCGGCATGAAGTTCTTCACCAACTACGAACTCCAGGAGCATTCTATAAAGCACGGTGGTGAGAGGATCTACCAATGCGACGTCTGCAAGAAAGCGTACGCTAGGCTGAAAACGTTGCGGGAACATATGAGGATTCATAACAACGATAGGAGGTTCACTTGCCCGGTCTGCGGTTCGTACGTATTACCTGATAAGGAAACGTTTACTGCTGAAAAACAAACGGCGAATCTAAAGAAGAGAAACGATGATATCAAAGCGAAACAACAGCGCGCTCTGATACTTCTAGAAAATTCTAGGATATGCCCCTTTAGGTGGATGAAGAATACGTATATTTGCATCTATTGTGAACGGTATTTCAACAATCCCATAGAAATGAGAAAACATAACGCGTCAGAACACGAGAGATTGACTCAAACTGACATTAAAATCGCAATATCGAAACTGAAAAAATACGAGCTGGTCAAAGTTGACGTCACAAATGTAGACTGTAGAATCTGTGATAAAAGTATTAAAATGTATAAAGAGCTTAAAACTCACCTCGCTGAAGAGCACGGAAAGAATATAGACCCGAACGCGACAGACGGTGTCTTGCCTTTCAAAGTGACGCCATCGCATTACAGCTGCGGCATCTGTAGTGAGAGTTACGAAGAATTCAAGAGTCTGAACCATCACATGAACGTGCATTTCCAGAACTTTATCTGCGATCAGTGTGGAGTTGGGTTCATTACCCCGGGAAGGTTGCGGACACACGCGTTCTCGCACGAGACTGGATCGCATCCCTGCGACAGTTGCGATAAAGTTTTCCGTTCCTCAAACGCAAAGAACGAACACAACGCGACGGTGCATTTAAAAGTCAAAAGGCATAGGTGTCCACATTGCGCTGATACCTTTAGGAACTATTTCCAAAGGAACAAACACATCGCATCGGTACACGGCTTGAAACTTAAGGAATTCAAATGTGCGATGTGCCCAAAAGTGTTTAATTTGAGCGGAAAATTGGGTGTGCACGTGCGTACGGTGCATTTGAAGATGAAGCGTCACGCTTGCGAGGTTTGCGAGTGGAAATTTTATTCCAAGTCGGAGTTAAAGGACCATATGATCCGACACGGCGGCGAGAGGAAGTTCCAATGTAACGTATGCAAGAAAGCGTATGCTCGGAAGTATACACTAAGGGAGCATATGCGGATACATGAGAACGATCGACGATTTGTGTGTAGTACATGTGGGAGGTCCTTTGTTCAGAATTGTAGTTTGAAGCATCATACGAAGATTCATCACCCGGTTGATGCGCAGACGATGAAGATGACCTCGTTTGTGAAGTGA
- Protein Sequence
- MHLTLPAVLNKTLLRGRKNEKIQPKREVDCVTENVTAVVATTRDGDDRRSIFRNNIAIIMQSSSAYPFKYRKGTYLCFFCKSSFMEPEKLREHTRDQHSDFRQLKPRKYEPLKMDFATIHCKLCGLDIPNYLALKFHLTVEHGKVIDSSYGESVLPYKLCKNEHCCQICGKRYEMFLSLHKHMNDHYEYYICETCGKRFATSQRMVNHTRTHERGEFPCKKCTETFTSYSARYAHVAKVHKSNKRYKCPICDEKFSSYKHRLKHLSTVHGEKTAVFPCPSCPKVFDLCSRRTAHIRFQHLQERKHVCSVCGMKFFTNYELQEHSIKHGGERIYQCDVCKKAYARLKTLREHMRIHNNDRRFTCPVCGSYVLPDKETFTAEKQTANLKKRNDDIKAKQQRALILLENSRICPFRWMKNTYICIYCERYFNNPIEMRKHNASEHERLTQTDIKIAISKLKKYELVKVDVTNVDCRICDKSIKMYKELKTHLAEEHGKNIDPNATDGVLPFKVTPSHYSCGICSESYEEFKSLNHHMNVHFQNFICDQCGVGFITPGRLRTHAFSHETGSHPCDSCDKVFRSSNAKNEHNATVHLKVKRHRCPHCADTFRNYFQRNKHIASVHGLKLKEFKCAMCPKVFNLSGKLGVHVRTVHLKMKRHACEVCEWKFYSKSELKDHMIRHGGERKFQCNVCKKAYARKYTLREHMRIHENDRRFVCSTCGRSFVQNCSLKHHTKIHHPVDAQTMKMTSFVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -