Aper018450.1
Basic Information
- Insect
- Antheraea pernyi
- Gene Symbol
- -
- Assembly
- None
- Location
- GWHABGR00000047:5900964-5912264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.00037 0.024 15.3 0.2 2 23 194 216 193 216 0.95 2 19 5.1e-07 3.4e-05 24.3 0.6 2 23 222 244 221 244 0.97 3 19 0.0032 0.21 12.3 1.3 6 23 309 327 307 327 0.95 4 19 0.0055 0.36 11.6 0.3 1 23 339 362 339 362 0.96 5 19 0.011 0.71 10.7 0.6 5 23 372 391 370 391 0.92 6 19 0.00073 0.048 14.4 1.0 1 23 403 426 403 426 0.96 7 19 0.0059 0.38 11.5 1.9 6 23 437 455 435 455 0.94 8 19 6.5e-06 0.00043 20.8 2.7 1 23 467 490 467 490 0.98 9 19 0.0057 0.37 11.5 1.3 5 23 500 519 497 519 0.92 10 19 3.7 2.4e+02 2.7 0.5 5 23 535 554 534 554 0.92 11 19 0.004 0.26 12.0 0.9 5 23 564 583 562 583 0.92 12 19 3.7e-05 0.0024 18.4 3.8 1 23 595 618 595 618 0.96 13 19 0.0046 0.3 11.8 1.0 5 23 628 647 626 647 0.92 14 19 7.9e-05 0.0052 17.4 0.2 1 23 659 682 659 682 0.96 15 19 0.0065 0.43 11.4 1.5 5 23 692 711 690 711 0.92 16 19 1.4e-05 0.00091 19.8 5.4 1 23 723 746 723 746 0.96 17 19 0.0048 0.31 11.8 1.6 5 23 756 775 754 775 0.94 18 19 0.00021 0.014 16.0 1.4 1 23 787 810 787 810 0.97 19 19 0.0076 0.5 11.1 0.8 5 23 820 839 818 839 0.93
Sequence Information
- Coding Sequence
- ATGAAGGATGAAACAAATATAAACATGGATAACAAGGATCATATAGTACTCAGCTGGGATACACTGGGTACCACAGGTCTGAATCTACAGATGTCTTCACCAACACTGACAAAGGAAAAGATAGCGTGTGTAGATGAGAAAGAGTACCACAATTATGACAATAATTGTGAGGATTCATCTGAGCATGTACAATCATCAGAATATGTAAATTACTATGACAATGAGAATTATGTGGATCAACTGAAGAGTGAATTCCCTGAGGATGTACTTCCTCAATCAGACTGCGGTGTGGATAGTAAAATGCATTCTGAAAATGAGGAATTACTAAAATTTATAGCTAAAGCAGAACTAAATAATGAAAATATAGAGGATGGACTGTCATTAAATATAAAGGAAGAAAATGATTATAATGAGTATCAGTTTATTGTAAAAACGGAGGACCTTGAAAAGCAAGAAGACACCCAATGCAAGTTCTCTCACAAAACATTAAAGAATGGTTGTAATTTGTTACAAAACAGTAACAAACACGTTAGAGTTCAAATAAGTGCACCGCTGGATAATGGAATTACTGAAGTAAATCAGTGCCAATATTGTGGCAAAGGATTTGATGATTACAATAATATGCTTGTACACATCAGTAACGAGCATAAACAGAAAAACTCCAAGTGTGACATATGTGACAAACGATTCAAGAGTATTGGAAACTTAAAACGTCACATTCTGACTGTCCATAAACTTGACAAACCACCAGAGCCTGTAACTGAAAATTGTGTGAATTGTCATGTGGAATTTCAACATAAATGCCCACTGAATGATCATTCGAAGCTGTGTTGCTCTAATAAAGAGGATGGAGAAGATGGGAGTGAAAATAAAGTAACAAGGAATATAACTAATTATGACTATGGGACAATTCTCGAATCTAGTTGCGGGAAACAGTACCGTTCACCGATACACTTACGAAAGCATCAAAAGCTCAGACACCGACGTAAGATTCCGAAAACAAATAATGATAGATTCCAATGCGATTCTTGCAAAAATGTCTTTAAAACAAAACCGGGTATAGTCAGACATATAAAGTTAGTGCATTTTGATTACGGGAGGAAGTTTGAATGTTGGTGCGGGAAACAGTTTCGGTCACCGATACACTTACGCGAACACGAGACACGCATCCATAAGCGAAATGTTAAAAATACTAATGATGACAAATTCCAATGTGATTATTGCAAGAACTTCTTTAAAGGAAAATCCAGTGTAGTTAGACATATAAAGGCAGTGCATTTTGATTATGGGAAACGTTTTGCTTGTTCGTGCGGGAAACAGTTTCGTTCACCAATACATTTACGCAAACACGAGAAAAACATCCACCGGCACAATGTTCAAAATACTAATAATAGCAAGTTCCAATGCGATTATTGCAAATTTTTTTTCAAAACAAAATCGAATCTATTGTTACATATACAGAGAATTCATTGTGATTATGGGAGGGAGTTTGAATGTTGGTGCGGGAAACAGTTTCGTACACCGATGCATTTACAAAGTCATGAGAATCAAACCCACCGGCGCAAGGTTCAAAATACTAATAATAGCAAGTTCCAATACGATCATTGCAAAATTTCCTTTAAAATTAAAGGGAATTCAGCTAAACATATAAAGGCCATGCATTTTGATTATGGGAGGAAGTTTGAATGTTGGTGCGGGAAACAGTTTCCTTCGCCGAAACATTTAAAAAATCATGAGAATCAAACCCACCGGCGCAAGGTTCAAAATACTAATAATAGCAAGTTCCAATGCGATCATTGCAAAATTTCCTGTAAAACCAAAGGGAATTTAGTTAGACATATAAAGGCCATGCATTTTGAGTATGGGAGGAAGTTTCAATGTTGGTGCGGGAAACAGTTTCGTTCACCGATGCATTTACAAAATCATGAGAATCAAGCCCACCGGCGCAAGGTACAAAATACTAATAATAGCAAGTTCCAATGCGATAATTGCAATATTTCCTATAAAATCAAAGGGAATTTAGTTAGACATATAAAGGCAGTGCATTTTGACTATGGCAGGAAGTTTCAATGTTGGTGCGGGAAACAGTTTCGTTCACCGATGCATTTACAAAATCATGAGAATCAAACCCACCGGCGCAAGGTTCAAAATTCTAATAATAGCAAGTTCCAATGCGATCATTGCAAAAATTCCTTTAAAACCAAAGGGCATTTAACTAGACATATAAAGGCTATGCATTTTGACTATGGCAGGAAGTTTGAATGTTGGTGCGGGAAACAGTTTCGTACACCGTTACATTTACGCAACCACGAGAGACAAACCCACCGGCAATATGTTCGAAATACTATTAATAGCCAGTTCCAATGCGATTATTGCAAAAAATTCTATAAAGGCAAATTGAATTTAGTTACACATATAAAGTTAGTGCATTTTGATTATGGGAGGAAATTTGAATGTTATTGCGGGAAACAGTTTCGTTCACCGATACACCTATACCAACACGAAAAATACGGGCACAATGTTAAAAAAATTAAAAAAACAGTCAATTCCAATGCGATTATTGTAAAAAAAATTTTCAAAAGAAATTTAATCTAA
- Protein Sequence
- MKDETNINMDNKDHIVLSWDTLGTTGLNLQMSSPTLTKEKIACVDEKEYHNYDNNCEDSSEHVQSSEYVNYYDNENYVDQLKSEFPEDVLPQSDCGVDSKMHSENEELLKFIAKAELNNENIEDGLSLNIKEENDYNEYQFIVKTEDLEKQEDTQCKFSHKTLKNGCNLLQNSNKHVRVQISAPLDNGITEVNQCQYCGKGFDDYNNMLVHISNEHKQKNSKCDICDKRFKSIGNLKRHILTVHKLDKPPEPVTENCVNCHVEFQHKCPLNDHSKLCCSNKEDGEDGSENKVTRNITNYDYGTILESSCGKQYRSPIHLRKHQKLRHRRKIPKTNNDRFQCDSCKNVFKTKPGIVRHIKLVHFDYGRKFECWCGKQFRSPIHLREHETRIHKRNVKNTNDDKFQCDYCKNFFKGKSSVVRHIKAVHFDYGKRFACSCGKQFRSPIHLRKHEKNIHRHNVQNTNNSKFQCDYCKFFFKTKSNLLLHIQRIHCDYGREFECWCGKQFRTPMHLQSHENQTHRRKVQNTNNSKFQYDHCKISFKIKGNSAKHIKAMHFDYGRKFECWCGKQFPSPKHLKNHENQTHRRKVQNTNNSKFQCDHCKISCKTKGNLVRHIKAMHFEYGRKFQCWCGKQFRSPMHLQNHENQAHRRKVQNTNNSKFQCDNCNISYKIKGNLVRHIKAVHFDYGRKFQCWCGKQFRSPMHLQNHENQTHRRKVQNSNNSKFQCDHCKNSFKTKGHLTRHIKAMHFDYGRKFECWCGKQFRTPLHLRNHERQTHRQYVRNTINSQFQCDYCKKFYKGKLNLVTHIKLVHFDYGRKFECYCGKQFRSPIHLYQHEKYGHNVKKIKKTVNSNAIIVKKIFKRNLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -