Aper013459.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Antheraea pernyi
Gene Symbol
-
Assembly
None
Location
GWHABGR00000039:1849116-1882611[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 6.5e-05 0.0042 17.7 0.1 3 23 131 151 130 151 0.97
2 12 5.8e-07 3.8e-05 24.1 1.2 1 23 157 179 157 179 0.99
3 12 3.6e-06 0.00024 21.6 2.7 1 23 185 207 185 207 0.99
4 12 2.3e-07 1.5e-05 25.4 1.5 1 23 222 244 222 244 0.99
5 12 0.0001 0.0067 17.0 2.8 1 23 250 272 250 272 0.98
6 12 0.023 1.5 9.6 1.8 1 23 279 301 279 301 0.98
7 12 3.9e-07 2.6e-05 24.6 2.3 1 23 307 329 307 329 0.99
8 12 0.027 1.8 9.4 1.8 1 23 336 358 336 358 0.98
9 12 1.6e-06 0.0001 22.7 1.5 1 23 364 386 364 386 0.99
10 12 0.0013 0.085 13.6 0.3 1 20 392 411 392 414 0.93
11 12 2.5e-05 0.0016 19.0 1.4 2 23 421 442 420 442 0.96
12 12 1.9e-06 0.00013 22.5 1.3 1 23 448 471 448 471 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAGCCCATGAGCTTCTACACATCCCATCCACACATTCACTCTGGTCCTACAACAATAATCCGTTCAGACTCCAATCAAGGAATCATCAATATGCATCACCAACATCATCAGGAGGACTCAAAAGACAGCCTTATACATCAACAAGTACAACACCAACAAGATCTCATGGAACAACACCAGCATCAGCAACAGGAAATGCATCAAGATGATGAGCTCAGTTTCAAAGGAATTGACGACGAAGGTGTCGAATTAGAAATGGACAGTCGCCATTGTTCTCAGGGTATGGGTGTTGATATGGGATCAGTACAAGCTAAAATGGAAGTAGCAAACGGTGGTCAACCTACAACACGTTCAAAGCCTCAAGCCTGTAAGGTTTGTGGCAAAGTATTGTCGTCCGCTTCGTCCTATTATGTTCACATGAAACTTCATTCCGGAAATAAGCCCTTCCAGTGTACGGTTTGCGATGCGGCCTTTTGCCGTAAACCGTACTTGGAGGTACATATGCGCACGCACACGGGGGAACGCCCTTTCCAATGCGATCTATGCCTGAAACGTTTCACACAAAAATCCAGTCTCAACACGCACAAACGCGTTCACACAGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGTCCATATCAATGCGACATCTGTGACAAGCGGTTCACTCAGAAGTCCAGCCTTGGCACTCATAAACGTATACACACCGGGGAGCGCCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAAATACATACGGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACTTGGAGATTCACACGCGCACCCACACCGGCGAGCGGCCGTATCAGTGCGACATCTGCTTGAAGCGCTTCACGCAGAAGTCCAGTCTCAACATACACAAGCGGACGCATTCAGTGCAGGGCCGCCCGTTCCAGTGCCTGCAGTGTCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGCCCCTACCAGTGTGACGTCTGCCTCAAGAGATTCGCGCAAAAATCAACACTCAATATACACAAACGAACGCACACAGGTGAACGACCGTATGCCTGTGACATTTGTCAAAAACGATTTGCTGTGAAGAGTTATGTAACAGCTCACAGGTGGTCTCACGTAGCGGACAAGCCACTAAACTGTGACCGGTGCTCGATGACGTTCACATCGAAGTCCCAGTTCGCTCTGCACATCCGCACGCACTCCGCCGGCTCCTGCTACGAGTGCAGCGTCTGTGGCCGGAGCTTCGTTAGAGATAGCTATCTTATAAGACATCACAATCGTGTGCATCGTGAAAACCACAGTAACGTGTCGGCGAACAGTATCGGAACACTCAACAGTGTCGCAACAAACACAAACAATTCTAACAGCAATTTCGATTCGCCGGGTGTTTGCGATTTAAGTTTCGTGCCAATGGTCAATCGTTATATGACTTCGCAAGGGACACAAGTATCAATGCAGGACACGCACAGCAAGATGTCCGCCATGTCTCCGCAGTCCATTGCGTCAATGTCTTCACCTCCTCCATCACACACCCCGACGCCCCAGCCCCAGATGTCTGGTCAGATGCATCTGACGGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHIHSGPTTIIRSDSNQGIINMHHQHHQEDSKDSLIHQQVQHQQDLMEQHQHQQQEMHQDDELSFKGIDDEGVELEMDSRHCSQGMGVDMGSVQAKMEVANGGQPTTRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTEEHIQSLINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHSAGSCYECSVCGRSFVRDSYLIRHHNRVHRENHSNVSANSIGTLNSVATNTNNSNSNFDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTHSKMSAMSPQSIASMSSPPPSHTPTPQPQMSGQMHLTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00784581;
90% Identity
-
80% Identity
-