Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 0.25 1.7e+02 2.2 0.0 17 28 77 88 76 91 0.83

2 2 9.3e-14 6.3e-11 42.0 0.2 1 37 162 199 162 205 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	0.25	1.7e+02	2.2	0.0	17	28	77	88	76	91	0.83
2	2	9.3e-14	6.3e-11	42.0	0.2	1	37	162	199	162	205	0.88

Coding Sequence: ATGGATGTGCGATTATTTCATTTGAAATATGATGTCACGTCACGTCACGTGAGCGTCGCACAACAGCATGCAGTCGCGTGGTCAAAAGAACACTCGACGGCAACAATCGTGACACAATTACTACAGATTTTCGTTGCATCATTATTCCAGTATCTATTCCCTGTTCCGGCTATAACGGTGATATTACAAGGCGAGACGCTCACTTTTATAGGCCTTCATAAACTGGTGACCACTTTACGGAAGGCAGCGAAGCAATACAACCTTGGCGCATCGGGCAATGCAGCGGGGACCTTGCAAGTCACGCGTCAGAGTAACCTCGACTCACGGCGTACTCGTGCCGCTACTATTATTTCCTCTGATGTTATCGCACTACAGTGCCGCCTTAGATCGTTCGGCTTCCATTGCTCGTATAAATCATTCGTTGCTGCGTTTAGGAAAACAATGGTACGTAAATACGAAAGAATGAGCGGACGACAATCATGGAGCGAAGAAGATATGGCTAAAGCGGTGGCAGCCGTCGTTTCAGGTAAAATGGGCTACAAATTGGCTGCCCGAACCTTCCATATACCACGGTCCACACTCCAGCGGCGTGCTAGCAAAATACGATACCAACAGCCTGACGATCCCAAACCATTGATGGGCCATTACAGAAGAGTTTTTACAGACAGCCAGGAGAAAGATTTAGTTGGCTACATAAAAAGTATGGAGAAGTATTTTATGGGTGTCTCCAGGAGAGACATCAGAGAATTAGCGTTTCAATACGCAGAGGACAACAACTTGAATCATCCTTTCGATGTCAACAGCAGAATGGCTGGTGAAGATTGGGTCAGAAATTTCTTAAAGCGGAATCCCGAATTGTTGGATAGATCTGTTAACGAGCTCGGCTTGGAGCCAGTCAACTTCGATCAGTTCTATCATTTTATGTGTCAATTTTCATGA
Protein Sequence: MDVRLFHLKYDVTSRHVSVAQQHAVAWSKEHSTATIVTQLLQIFVASLFQYLFPVPAITVILQGETLTFIGLHKLVTTLRKAAKQYNLGASGNAAGTLQVTRQSNLDSRRTRAATIISSDVIALQCRLRSFGFHCSYKSFVAAFRKTMVRKYERMSGRQSWSEEDMAKAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKIRYQQPDDPKPLMGHYRRVFTDSQEKDLVGYIKSMEKYFMGVSRRDIRELAFQYAEDNNLNHPFDVNSRMAGEDWVRNFLKRNPELLDRSVNELGLEPVNFDQFYHFMCQFS

Sequence clustering based on sequence similarity using MMseqs2