Basic Information

Insect: Antheraea assamensis
Gene Symbol: ush
Assembly: GCA_035772565.1
Location: JAQQSE010000087.1:938541-941047[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00045 0.035 15.2 1.0 1 23 140 162 140 162 0.98

2 8 0.058 4.6 8.6 0.7 3 20 193 210 192 212 0.93

3 8 0.021 1.7 10.0 3.9 2 21 452 471 451 472 0.95

4 8 0.0063 0.5 11.6 0.2 3 20 501 518 499 520 0.90

5 8 1.3 1e+02 4.3 0.0 2 23 548 569 547 569 0.94

6 8 0.0091 0.72 11.1 1.3 1 23 575 597 575 597 0.99

7 8 0.48 38 5.7 0.7 1 23 636 659 636 659 0.95

8 8 0.2 16 6.9 0.7 2 20 691 709 691 711 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00045	0.035	15.2	1.0	1	23	140	162	140	162	0.98
2	8	0.058	4.6	8.6	0.7	3	20	193	210	192	212	0.93
3	8	0.021	1.7	10.0	3.9	2	21	452	471	451	472	0.95
4	8	0.0063	0.5	11.6	0.2	3	20	501	518	499	520	0.90
5	8	1.3	1e+02	4.3	0.0	2	23	548	569	547	569	0.94
6	8	0.0091	0.72	11.1	1.3	1	23	575	597	575	597	0.99
7	8	0.48	38	5.7	0.7	1	23	636	659	636	659	0.95
8	8	0.2	16	6.9	0.7	2	20	691	709	691	711	0.92

Sequence Information

Coding Sequence: ATGCCGGGAGAACCTCGCACGCCAAGCTCGGGAGGCGAACGACCGACGTCCAGTGGTGGAATTTCACCGGCTTCGGGTAGTTCACCAGCTGCTTCGCCACCGCGCCTTCGTCTCAACACAAGTCTCGCCACAGATCCGGCACTGGCACCACAGGCGACCACTTTAAAACGTGAACTACCTTCTCCTTCACCGCCTCCGCCTCCAGCACCTCAGTCTCGAGATTACATCGCGCTAACAGCAGCAGCTTTCCAGGACTGTTCCCAACAACTGCTGCTCCCAGCTACATATGCAATCCTTGTGGAGCATTATTGCTCAAACAGGAAACCTAAACAACCGGAATCTACAGATTCTCCAACAGACGCTGTGGCAGATGAGTCGAGTAGTGATGCAAAGACACCTCGTCCACCAAACAAACAATACGCATGTACGTTTTGCTCATACAGCGCTGATAAAAAAGTTAGCCTCAACCGACACATGCGAATGCATTCAACATCTCCTGTGAGCAGTGGAACACCAGCCCCAACACCAACATCAAACGGCGAAGTTACCGAGGGTCCACCTGCACAAGATCGATATTGCGCTGATTGTGATATTCGTTTTAGTTCAATAAAAACGTTTAGAGCTCATAAGTCACATTATTGCAGCACGCGTCAAGTGGTCAAACAAGCATTGCAAGCGATACGAGGTGGTTCCGCCACATCAGGGTCAGCTCCACCTTCTCCTGGAGCTACACCTCCAGCACAAAACCAATATGCTTTAGCTTTACCAACAAATCCAATACTGATCGTTCCGTATTCGTTACTACGAAGTGCTAGTACACTCCCTGGTACTACATTGCCTGATCCAGATACACCTTGTTTTTTACTGCCGAACGGTACATTTCAACCTCTAAGTCACGCGTTACCAAATATAAATGCGGAGGGAAAAAGTACTGAGGTTTTAAAATCTGCAAACCGTCCGCGAGATGCATCACGAGAAGGTGCTACTCCACTGGACCTTAGTGTGCGTCGGTCTCCAGAATCCTTGACAACTGACGAACATGAGAAAGAAAATAGGATACGTTCAGCGACCCCTGAGCAAATTGTGTGCGCTCCATCATTACCAGGGTCTCCGGGTACACCGTCACCTTCTCGGCGGTCTTCTTCTCCAAGTGTCGAAAGTTCACCTAAACGACGACGACGTAATTCAAGAGGTCCCACCCCAAAGCTGCCAATTGCACCTTCACCTCCCGAAGATAAATTTTCACCCATAGTTCCGTCTCCGATTATACCACCTGCTTTAGCATTACGACTTGCATCAGAACTACCTGTCACTGCAGCGTCACCACAAGTGTTAGTGAAACAAGGAGTATCAAAATGCAAGgaatgtaatattgttttctgcaaatatgaaaattatcgTATTCATAAAAGACACTACTGTTCCGCTGGGAGTGGCGAAGAAAGAGCAAGTCCTGCACCACCTGAACCAGGTCCACCGCCGCAATATCGGCAATTGATTTGTTTAGCGTGTGGTATACACTTTAGTTCCCTAGACAATCTGACGACTCATCAGTCTTACTATTGCACAAAAAGGGAAACCCGATCTCCGAGAAATATTCCCGAAGTCCCGAGACCATCTTCAGGCTCTGAAGGCGGTTGGAAATGTCCATGTTGCGATGTAGTATCTCCAACAGCAGCCGCAGCCCAGCGACACATGGAGGCCCACGCTGGGGTCAAAGCGTTCCGTTGTACTATCTGCCGATACCGGGGGAATACTTTACGTGGCATGCGTACGCATATACGCATGCATTTCAACAATAAGAAACCTGCTGATTTACAGGAGGAAAGCTACATTTCCTGCGTTCTGGAAGACGATATTCGTGAAACGACATCGCCCAGTCCAGCTGTCGCCGGGGAAAGGGTCCATCGATGCGGTAGTTGCGCTTATACGTCCACCTACCGCGGAAACGTAGTCAGACACGCCAGGTTAGTTCACGCGACCGACGAACCAGACGAGGAGCAGACCTCACCGATCCCCACCGTCGACATAAAGAAAGAACCGGAAAACGAGACGGAAGAAACTCCTAATTATTGCAAATCATGTGATATCTCGTTCAAATATGTAAACACATATAAAGCGCATAAACAGTTTTACTGCACTGCAAACAATCAAGATGCTTCTGCTAATAACAATCTGCCGGCGCCTCCACCTCGGGTTACCGACACTCCCGTACTATAA
Protein Sequence: MPGEPRTPSSGGERPTSSGGISPASGSSPAASPPRLRLNTSLATDPALAPQATTLKRELPSPSPPPPPAPQSRDYIALTAAAFQDCSQQLLLPATYAILVEHYCSNRKPKQPESTDSPTDAVADESSSDAKTPRPPNKQYACTFCSYSADKKVSLNRHMRMHSTSPVSSGTPAPTPTSNGEVTEGPPAQDRYCADCDIRFSSIKTFRAHKSHYCSTRQVVKQALQAIRGGSATSGSAPPSPGATPPAQNQYALALPTNPILIVPYSLLRSASTLPGTTLPDPDTPCFLLPNGTFQPLSHALPNINAEGKSTEVLKSANRPRDASREGATPLDLSVRRSPESLTTDEHEKENRIRSATPEQIVCAPSLPGSPGTPSPSRRSSSPSVESSPKRRRRNSRGPTPKLPIAPSPPEDKFSPIVPSPIIPPALALRLASELPVTAASPQVLVKQGVSKCKECNIVFCKYENYRIHKRHYCSAGSGEERASPAPPEPGPPPQYRQLICLACGIHFSSLDNLTTHQSYYCTKRETRSPRNIPEVPRPSSGSEGGWKCPCCDVVSPTAAAAQRHMEAHAGVKAFRCTICRYRGNTLRGMRTHIRMHFNNKKPADLQEESYISCVLEDDIRETTSPSPAVAGERVHRCGSCAYTSTYRGNVVRHARLVHATDEPDEEQTSPIPTVDIKKEPENETEETPNYCKSCDISFKYVNTYKAHKQFYCTANNQDASANNNLPAPPPRVTDTPVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00113754;
90% Identity: iTF_00114513;
80% Identity: -