Aass021059.1
Basic Information
- Insect
- Antheraea assamensis
- Gene Symbol
- -
- Assembly
- GCA_035772565.1
- Location
- JAQQSE010000141.1:770355-783926[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.045 3.6 8.9 1.4 1 23 440 462 440 462 0.99 2 11 0.3 24 6.3 7.4 1 23 469 492 469 492 0.94 3 11 0.00047 0.037 15.2 0.3 1 23 523 546 523 546 0.96 4 11 0.012 0.92 10.8 1.0 2 23 551 573 550 573 0.93 5 11 0.015 1.2 10.5 0.1 2 20 584 602 584 604 0.95 6 11 3.1e-05 0.0025 18.9 0.2 3 23 614 634 614 634 0.99 7 11 0.055 4.4 8.7 0.4 3 23 651 672 651 672 0.97 8 11 0.00023 0.018 16.2 4.5 1 23 689 711 689 711 0.98 9 11 0.00029 0.023 15.8 0.8 1 23 717 739 717 739 0.95 10 11 1.6e-07 1.3e-05 26.0 2.5 1 23 745 767 745 767 0.98 11 11 0.00085 0.067 14.4 4.1 1 23 773 796 773 796 0.96
Sequence Information
- Coding Sequence
- ATGCTAATTACTCGCAATAAGGAATTATTTGAAGACTCAAATGGAAGTAATGAGTTTAATTTAGCGAACAAACCTTCTATACAGGGATCTGTTTCAACAACTTCCTTGAAAATAGAAGAGAGAGAAAAGACTAAAGATTTGGACACAATTGAGATTaccaaagaaattaaatatcagTATGACTTGAATCCTGAAATGAAGGATATAATCGACTCGAAAAAGATATATGCTGTAGTTAGGGAGGGCAGAGTGAAGTACACAGCGACTTCAGTAGGAACTGATTCTCGGATATCTTTAGTTCAAgGCACAAAAAGTAGTTGCGATGCGCTTAAAGTAAACTTTTTAGGTTTGAGAAGGGTTTCGGACCACACTGTATTGGTGAGATGGAACACTCCTCGTAACACGACTGATATTCAAGGATACGAGtTGCAGGTAGACGGTCGAGCTGTTCAGAAAATCCTCAGTCCTACACGTAATATAGCTGTTGTGACTTGTCTGCCGCATTGTGATAAATTACTTCTCACAGTTAGAACCATTACTTCAGTTATGACTGACCTAGATCATTACCCTTCTGTTACTTTACCAAATGGTCACATTTGCTTCGAGTGTGCCAGGTTGTTACAAAAGTGGCAAGAATTCAAATTACAGTGTCTCCGAGCAAACCAGATTCTATGTACAGTTGAAACAGACAGTCAAGAGCTAACAAAgagtataattgaaaatattgatcGGAATGAGAATAAGTTAGGATTGAATCTTATCATCTCCTCATTAAATGTAATTCATTATGATTTGATATATAATGCAGAAGGCTCATTTGCAAATGAAGGTAAGTCTCACACAGAACCAAAAATTGAAGAGACTGCAATTAAAACTGAAGATTATGAAAACTTAAATGGAGACAATTTAAATGACTTTCATGATTCCTATGAGCCTATTAAAGAGTCTGACTTagatattgataattatttaactaaagAACCTCATTTTGGCATACGGAATACAAAGAAACCAAAACTGAATattatcaaaagaaaaaaagaacataaatcAAAAAAACGAAAATTGGACATATCTAATGTTAATACAGAACTTAAAGAtgacaaaaaatacatagaaaacACATTGAGTGATGATGAGCCGTTAgctaaaatttcaaaaaattacaTAGACAAGGAAAATGTGAAAAAGAAATACCCGAAAAATTTCAACATAGACTATTTTGAAGATTATGCTACAGTTGTGTTCCTCACACCTGATGATGCGAGGAAAGAGCTCCTCTTGAGGAAGGATacattaaactataaaaattcaCCCTACAAATGTGAATTGTGCTACCGTGGTTATGAAGCAAAGACTGCATtcgaaaatcataaaaaaaggCACAGTACTgACTATGGTGAATATAAATGTGATCTCTGTCACTTAAGGTTCCCGGAACAAAGGTTCTTATGCAAGCATCGTCTAGCCTGTCATAAAAGAAAGTTCTATTGCAAACTGTGTCCGTATGTTTGTTTCTGCACGCACCAAGCTAAAACTCATGTGAGTCTGCATAAAGGGAAGAAGTATCCGTGTAAAGAGTGCAGTGAAGTATTCAGTATGCCGAACAGCCTGCTGATGCACAAACGGTTAAAACATCTCACCGAGTGTGTTTGTGAGTTATGCGGTAGCACGTTTGCCACACAGAGAGGGCTGTATTCGcataatatgaaaatacataGGCAGGACAGAAATGGTAAGCTCGGTCCGAAATGTGAAGACTGCGGCATACATTTTGCTACGGAGATCGCTTGGAAGAAACACCTGGTTCTATCATCGAGACATCAAGTCAGcaacGGCTGTAAATACTGCGGAGAGACGTTCCCGAACGGCGAAGAGTTAAAGAGACACGCGCGCGTTCACGCAAGGAAACACGTCAATCGCGGGGACAATGTCAAATTACCCGCAGGATGTTCTAttTGTGATAAATGGTTATCGGATCGCAACGAGTTCAAATCCCACATGATCTCTGAACACCCGCTCTCTGATGTAGCGAAGAGGCTGGATCTTGAAGGTCAGACGCCTTTCGTATGCGAAGTGTGCGGGCAGATGTTCAAGAAACAGTGTTTCCTGACGTACCACCAGAGGAAGCACACGGGCGAACGTCCTTACAAGTGTAAGGAGTGTGGGAAATGCTTTCAGTTGGCCGGAGCACTCTCCACTCACAGCGCCATACACACGAGAAAACGGGTACACAAGTGCGATATGTGCGGTCGGGTCTTCACTTTTAAAAGTGCACTCAACAAGCACATGAAGGTACACCTCGGAATACGACCACACAAGTGCACGATCTGCGACAAGTCCTTCATAAATCGATGCGACGTCAAACTTCACGTGAAATACGTTCACAATAAAGTACCGTGGCCGAAGAGGGACAGAAATAAACGAAACAATACCGACGATAATacctttatacaatataattga
- Protein Sequence
- MLITRNKELFEDSNGSNEFNLANKPSIQGSVSTTSLKIEEREKTKDLDTIEITKEIKYQYDLNPEMKDIIDSKKIYAVVREGRVKYTATSVGTDSRISLVQGTKSSCDALKVNFLGLRRVSDHTVLVRWNTPRNTTDIQGYELQVDGRAVQKILSPTRNIAVVTCLPHCDKLLLTVRTITSVMTDLDHYPSVTLPNGHICFECARLLQKWQEFKLQCLRANQILCTVETDSQELTKSIIENIDRNENKLGLNLIISSLNVIHYDLIYNAEGSFANEGKSHTEPKIEETAIKTEDYENLNGDNLNDFHDSYEPIKESDLDIDNYLTKEPHFGIRNTKKPKLNIIKRKKEHKSKKRKLDISNVNTELKDDKKYIENTLSDDEPLAKISKNYIDKENVKKKYPKNFNIDYFEDYATVVFLTPDDARKELLLRKDTLNYKNSPYKCELCYRGYEAKTAFENHKKRHSTDYGEYKCDLCHLRFPEQRFLCKHRLACHKRKFYCKLCPYVCFCTHQAKTHVSLHKGKKYPCKECSEVFSMPNSLLMHKRLKHLTECVCELCGSTFATQRGLYSHNMKIHRQDRNGKLGPKCEDCGIHFATEIAWKKHLVLSSRHQVSNGCKYCGETFPNGEELKRHARVHARKHVNRGDNVKLPAGCSICDKWLSDRNEFKSHMISEHPLSDVAKRLDLEGQTPFVCEVCGQMFKKQCFLTYHQRKHTGERPYKCKECGKCFQLAGALSTHSAIHTRKRVHKCDMCGRVFTFKSALNKHMKVHLGIRPHKCTICDKSFINRCDVKLHVKYVHNKVPWPKRDRNKRNNTDDNTFIQYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -