Aass020095.1
Basic Information
- Insect
- Antheraea assamensis
- Gene Symbol
- -
- Assembly
- GCA_035772565.1
- Location
- JAQQSE010000129.1:236050-241028[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.12 13.6 2.9 1 23 174 197 174 197 0.95 2 12 6.5 5.2e+02 2.1 1.9 10 23 220 234 205 234 0.92 3 12 0.00021 0.017 16.2 2.6 1 23 244 267 244 267 0.98 4 12 0.0073 0.58 11.4 1.7 6 23 278 295 276 296 0.93 5 12 2.3e-05 0.0018 19.3 3.1 1 23 309 332 309 332 0.98 6 12 0.003 0.23 12.7 0.5 6 23 343 360 341 360 0.96 7 12 3.3e-05 0.0027 18.8 2.0 1 23 372 395 372 395 0.98 8 12 0.005 0.39 12.0 1.1 5 23 405 424 403 424 0.96 9 12 8.6e-05 0.0069 17.5 2.3 1 23 434 457 434 457 0.98 10 12 0.15 12 7.3 0.7 6 23 468 486 466 486 0.95 11 12 0.00012 0.0097 17.0 1.6 1 23 498 521 498 521 0.98 12 12 0.51 41 5.6 0.1 5 23 531 550 529 550 0.88
Sequence Information
- Coding Sequence
- ATGGACTGCAAGGGTGTATCTAGTTGTGATAAATTGCATACAATAGCTGTAGACACACAGTGGGATCTAAAGATATCTACATCGAGAATAAAAAAGGAAACAGTTGAATGCATTGATGAGGAAGAATCATCGATCAATGATTATATGTATTTATCTGAGTCTCTGGAGTCAACAGAGTATGTGAATCACTTTGACAGTAAGCATTATGTGTTGGAACAAGTAAAGAAGGAAGTCTCTGAAGAGGAATGTCGCCCAGCAGGGGAAAGCGCAAATAGTAAAATAGTTTCTGAAGAAGATGAGGATAAAAAGTATAAGATTGCAATGAAAAAGGAAAGATTAGAAGGACAAGGAATATTGGATAAGAGTGGAGATGCTGAAACAGAGTATGATACCCTATTGGTTCCTCGAAAAATCCAATGTAGTTCGTCTGGCAGAAAATTCAGAGAGAATTACAACTCATTAGAAAACAATCGGGAACTCATAGAAGTTGAAATAAACACACCAGGGTTTGATGAATTATACAATTGCCAATATTGTGACAAACATTTTGACAGTTATGGTTATATGCATGCACATATTAATGATGTTCATAAGAGAACAAAACCAATATTTAAGTTATGTGGAAAACAAATCAAGAAGGAACAGAATCTTGAAGATTTCAAACATAAATACAGATTGAatgaacatataaaattatgtcaTCCTGGTAAAGAAGATGAGGAAATAGTGTACAAATGTGGCTTTTGTGAGAGAGTTTATAAGACTAAAGAGACTTTAACACTGCATAAAAAGAAAATGCATAATGATTATGGGAGAATGTTTGATTGTTGGTGCGGGAAACAGTTTAATTCACCTATGGACTTACGTTTGCACAGAAAACTACATCACCATATAAtaatcaacaaaaatataaataatggtaaATTCCAGTGCAACTCCTGCCACAAGTTTTTCAAGTCTAAACCGAGTTTAGCTTTACATATAAGGAAAATTCATTATGATTATGGGAGATTATTTGAATGTTTATGCGGAAAACAGTTCCGTTCACCAATTTACTTAAAGGAGCACAAGAAGGTGCACGAGCGCAAAACTCAGAATACAGATAAGGCCACATACCAGTGTGACTCCTGCAAGAAGCTTTTCAAAAGGAAACCCAATTTACTTGTACATATAAAGAGATTTCATTATGATTATGGGAAAACGTTTGAATGTTACTGTGGAGAACAGTTTTGTTCACCGATACTTTTGAATCAACACAGGAGGCGACGGCACGATCCTAAGATTCCAAATGCTAATAGATTTCAATGTGACACGTGCCAGAAGTTGTTCAAAACAAAACCATGCTTAATAGCACACATAAAGAGAATTCATTATGATTATGGGAGAATGTTTGAATGTTGGTGCGGTTATCAGTACCGTTCACCGATACAACTACACGAACATGAAAGGTCAAGGCACTATCCCAAGACCAATAAAACGAATAATGTGAAATTCCAATGCGACACGTGCAAGAAGTTTTTCAAAGCAAAACAGTCTCTGGTCGAACACATAAAGAGGATTCATAACGATTATGTGAAAATGTTTGAATGTTGGTGCGGGGAAGAGTTCCGTTCCCAATTAGAGTTGAGTGAACACAAAGAGGCAGAGCACGTTGTGTCTTTTGGAGGATTCAagtttagattttaa
- Protein Sequence
- MDCKGVSSCDKLHTIAVDTQWDLKISTSRIKKETVECIDEEESSINDYMYLSESLESTEYVNHFDSKHYVLEQVKKEVSEEECRPAGESANSKIVSEEDEDKKYKIAMKKERLEGQGILDKSGDAETEYDTLLVPRKIQCSSSGRKFRENYNSLENNRELIEVEINTPGFDELYNCQYCDKHFDSYGYMHAHINDVHKRTKPIFKLCGKQIKKEQNLEDFKHKYRLNEHIKLCHPGKEDEEIVYKCGFCERVYKTKETLTLHKKKMHNDYGRMFDCWCGKQFNSPMDLRLHRKLHHHIIINKNINNGKFQCNSCHKFFKSKPSLALHIRKIHYDYGRLFECLCGKQFRSPIYLKEHKKVHERKTQNTDKATYQCDSCKKLFKRKPNLLVHIKRFHYDYGKTFECYCGEQFCSPILLNQHRRRRHDPKIPNANRFQCDTCQKLFKTKPCLIAHIKRIHYDYGRMFECWCGYQYRSPIQLHEHERSRHYPKTNKTNNVKFQCDTCKKFFKAKQSLVEHIKRIHNDYVKMFECWCGEEFRSQLELSEHKEAEHVVSFGGFKFRF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -