Aass004534.1
Basic Information
- Insect
- Antheraea assamensis
- Gene Symbol
- -
- Assembly
- GCA_035772565.1
- Location
- JAQQSE010000021.1:1236025-1246112[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0032 0.26 12.5 2.2 1 23 293 315 293 315 0.98 2 12 0.001 0.081 14.1 2.6 2 23 323 344 322 344 0.92 3 12 0.12 9.2 7.7 1.2 1 23 348 370 348 370 0.96 4 12 0.0003 0.024 15.8 0.4 1 23 375 398 375 398 0.98 5 12 2.5 2e+02 3.4 1.2 1 23 402 425 402 425 0.92 6 12 0.018 1.4 10.2 0.1 2 20 444 462 443 464 0.93 7 12 8.4e-05 0.0067 17.5 0.6 3 23 477 497 477 497 0.98 8 12 0.051 4.1 8.8 0.3 2 23 517 539 516 539 0.96 9 12 2.8e-05 0.0022 19.0 2.3 1 23 550 572 550 572 0.98 10 12 8.1e-07 6.4e-05 23.9 3.1 1 23 578 600 578 600 0.99 11 12 0.82 65 5.0 7.0 1 21 606 626 606 628 0.94 12 12 1e-06 8.1e-05 23.6 0.2 1 23 634 657 634 657 0.98
Sequence Information
- Coding Sequence
- atggagGTACTAAAAGCATGTAGAATATGTCTCATTATGGACGTAAATATGTACGATTTGAGAATACAACCTTTGGAAACTTATTTTGAACTAATAGTCGGAAACCCTCTGAATGCAACAGAGCTACCAGCATTTGCATGCTTTGAATGTGCTGCTCTGGTGAAGAAGTATTATCGATTCAGAGATAAATGTTTAAAAGGCCAAGCAACATTATATAGGATTCTGCAGTCACATGGAGAGataacaataaaaaatatacaagaaataaaCAGGCAAAGCTTTCAATTATCATCAAATTTAACTGTCCATAAAGTACCACAAAACAGTATTGTTTATCATGAAGACagtgattttataattaaaaaggaaCTTACCACAGAAGATGATaagcacaaaataaaaatagaaggcAGTGTTAAAAAAGAAGATTGTCTCATCAATGAATCATTACACCAATCTACAAGTGAAGATGAATTTGAGGATAGTACTAAAGTAGAGTGTTTTGATGATATTGCTATACTttctgatgataatgatgaattATTATCTTTGGAAACTATTGATAAAGAAAAGAAAGCtaaagagaaaaagaaaaagggAGTGAAGAAAAAGGATATGGTTGATCCTTTGCAGAATAGCGAAAGTGCAAGTAACATAACAGAGATTCCTATAGAATTAACAGAAATAGTTCCTCCAAAGCCGAAGAGATATCGACCCAGAAATTCTTATGTTAAGAAAGCGAGGAGCAATACTAAAAGCGAAGGATCTACTGCAGGTGACCTTGAGGAGTTTGTTACTGTTGTTAAATTATCTGTAGAAGATCAAATGGAGGAAATAAACAAAAGACAGCAATCTTCAAACTACCTCAGGGCGGCGTTCAAATGTGATCTTTGCTATAAAGGTTTCATAGACACAAAGGCTTGGAAACATCATGTCAACAAACATGACCCGAGCGCAGGTGATTTAGAATGTCCAATCTGCAAATTTCGGTTCAAAACGCGATATTTGCTCCACAAGCACTCTGTTAGCCACGAGATGAAGTACATTTGTAAATCTTGCTCTTATGTCTCCACGTCCAAATTTCAAGCTAGACGACATGAGAATTGGCATAAAGGGGTCACATACGAGTGTCAGTATTGTGGGGAAGTTTCCACGAAATGGACGTCATATTTAAGCCACGTCCGCATCAAGCACCCATCGGAGTTCATATGCGACGCGTGCGGATGTTCATTCCTCAGCAGGCTCGGTCTCACCATGCACAAGAGCAGGATGCATAAAGACGTGCCTGATAAAATCGAAGCAGGAGATTGTAAAGAAGAAGCTGACCTGTACTGTAAGGAGTGCGACGTAAAGTTCATATCGATCGAAGCGTTCAAGAAACATCTGGTCATTTCTGTTAAACACAAGCACGTTACTCACAATAACGGATGTCGAGTTTGCGgtgaaacatttaaaaacacgGAAGAGTTGAGGATCCATCGGAAGGTGCACGCGAGGAAACTTCCCAAGAATTATCGCAGCAAACCTAACGATACTTCGTGGCCAATTCAATGTGAACATTGTTCAGAGGAAATCTCTAACGCGTGGGACTACTGGACACATTTCCGTCGAGTGCACCCCGATAAAAAGTACCCTGTTCAGAAGAACCACGTCTGCGACATCTGTGGCAAGGGTTTCAAGAGTAATACATTCCTAGTTTATCACAAACGTACGCATTCGGAGGAACGAGCGTTTAAGTGCTCGACTTGCGGGAAAGCATTCCACAATAACGGGAATCTGCAGCTGCACCAGAAGACTCACTCGGACGCGCGGCCCCACCCGTGCACGCTCTGCTTTAAAGCGTTTAAATGCAAAGGAGCACTAAACAAACACCTTAGGTGCCACACTGGTGAGAAGCCATATGTATGCCAGGTTTGTGGGAAGGCGTTCAATGACTCCAGTAATCAGAAATTACACATTCGTTCGGTTCATCTGAAACAACCTGTGCCCCGACGATCGCGTCTGCAAAGGAAAAACAACTCatag
- Protein Sequence
- MEVLKACRICLIMDVNMYDLRIQPLETYFELIVGNPLNATELPAFACFECAALVKKYYRFRDKCLKGQATLYRILQSHGEITIKNIQEINRQSFQLSSNLTVHKVPQNSIVYHEDSDFIIKKELTTEDDKHKIKIEGSVKKEDCLINESLHQSTSEDEFEDSTKVECFDDIAILSDDNDELLSLETIDKEKKAKEKKKKGVKKKDMVDPLQNSESASNITEIPIELTEIVPPKPKRYRPRNSYVKKARSNTKSEGSTAGDLEEFVTVVKLSVEDQMEEINKRQQSSNYLRAAFKCDLCYKGFIDTKAWKHHVNKHDPSAGDLECPICKFRFKTRYLLHKHSVSHEMKYICKSCSYVSTSKFQARRHENWHKGVTYECQYCGEVSTKWTSYLSHVRIKHPSEFICDACGCSFLSRLGLTMHKSRMHKDVPDKIEAGDCKEEADLYCKECDVKFISIEAFKKHLVISVKHKHVTHNNGCRVCGETFKNTEELRIHRKVHARKLPKNYRSKPNDTSWPIQCEHCSEEISNAWDYWTHFRRVHPDKKYPVQKNHVCDICGKGFKSNTFLVYHKRTHSEERAFKCSTCGKAFHNNGNLQLHQKTHSDARPHPCTLCFKAFKCKGALNKHLRCHTGEKPYVCQVCGKAFNDSSNQKLHIRSVHLKQPVPRRSRLQRKNNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01317552;
- 90% Identity
- -
- 80% Identity
- -